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davidebolo1993
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VISOR
VarIant SimulatOR for short, long and linked reads
GNU Lesser General Public License v3.0
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info column for duplication
#39
stcoh
opened
1 month ago
0
[Question] generating paired tumor-control samples
#38
waltergallegog
closed
2 months ago
4
Error models and quality models
#37
jyw-atgithub
closed
6 months ago
2
Can VISOR perform SV simulation within a given region?
#36
vegetableyu
closed
6 months ago
1
LASeR issue
#35
asylvz
opened
8 months ago
1
Updates for Badread v0.4.0
#34
GallVp
closed
8 months ago
0
New form of variation (I think) - non-reciprocal homoeologous exchange
#33
agolicz
opened
1 year ago
4
Keep old VISOR versions
#32
LYC-vio
closed
8 months ago
1
Inaccurate error message
#31
LYC-vio
closed
8 months ago
1
calculate ground truth copy number profile from HACk.bed
#30
Jiayi-Wang-Joey
closed
8 months ago
2
Definition of oriantation region of breakpoints
#29
infotmatician
closed
1 year ago
1
VISOR SHORtS for simulating pair-end data
#28
lx-1011
closed
1 year ago
1
More flexible read identities for LASeR simulations
#27
tomvanschaik
closed
8 months ago
1
Inquiry on genotype of SVs
#26
ngaitan55
closed
1 year ago
3
Compress output, centralise version declarations, and fixes
#25
tdido
closed
2 years ago
1
Ignore patch number if samtools version uses it
#24
tdido
closed
2 years ago
7
Release for conda package
#23
tdido
closed
2 years ago
1
some chromosomes BAM files generated by VISOR LASeR v1.1 were empty
#22
dxkeac
closed
2 years ago
1
"[Error] minimap2 must be in PATH", but it is
#21
ngaitan55
closed
2 years ago
1
Error for VISOR XENIA
#20
victor0104
closed
2 years ago
2
Assemblytics bed to HACk bed
#19
agolicz
closed
2 years ago
30
LASeR, no simulated reads
#18
azure-twilight
closed
2 years ago
9
The bam file truncated in the final
#17
SQLiu-youyou
closed
2 years ago
3
HACk - Ignores index out of bounds
#16
vrohnie
closed
3 years ago
2
HACk - Index error for reciprocal translocation
#15
cdelahaye
closed
3 years ago
4
Finally! Bus error (core dumped)
#14
lx-4199
closed
3 years ago
3
Major update coming
#13
davidebolo1993
closed
3 years ago
5
Feature Request: Add --length-max option
#12
tjiangHIT
closed
3 years ago
3
How to know the genomic origin (position) of the simlulated reads?
#11
biozzq
closed
3 years ago
2
Add MNP variant type?
#10
jasonbwarner
closed
3 years ago
4
Unable to generate 1bp deletion
#9
cfriedline
closed
3 years ago
5
Pacbio CCS (HiFi) data
#8
biozzq
closed
3 years ago
8
'Namespace' object has no attribute 'func'
#7
biozzq
closed
3 years ago
1
Adding --MD and --cs tag to minimap2-based alignments
#6
davidebolo1993
closed
4 years ago
0
purity question
#5
jiadong324
closed
4 years ago
4
questions about nested events
#4
jiadong324
closed
4 years ago
5
complex SV types not in list
#3
jiadong324
closed
4 years ago
2
Short read simulate issue
#2
jiadong324
closed
4 years ago
9
visor shorts: IndexError
#1
ptrebert
closed
5 years ago
4