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dcgerard
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updog
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
https://dcgerard.github.io/updog/
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How to Deal With The VCF File of AD
#33
jiangzuo007
opened
2 months ago
0
Fixes CRAN errors with updated version of Rcpp
#32
dcgerard
closed
9 months ago
0
itemize to describe to pass CRAN checks
#31
dcgerard
closed
9 months ago
0
Remove ggthemes dependency
#30
dcgerard
closed
9 months ago
0
Remove aes_string() and Fix CI
#29
dcgerard
closed
9 months ago
0
export_vcf function is not working
#28
huw143
closed
9 months ago
2
Specifying separate priors for each SNP in multidog
#27
gtbil
opened
11 months ago
2
Remove ggplot2 dependency.
#26
dcgerard
closed
9 months ago
0
Missing data for tetraploid multiparenting population
#25
PaulaEB
opened
1 year ago
3
ERROR: "non-finite value supplied by optim"
#24
knagasaka
closed
1 year ago
3
Have updog return phred-scaled genotype likelihoods
#23
YannDussert
opened
2 years ago
3
State which SNP provides warnings
#22
dcgerard
opened
2 years ago
0
Missing Parental Data
#21
dcgerard
opened
2 years ago
0
`multidog()` does not work with odd ploidy species when `model = "f1"`
#20
kostasgalexiou
closed
2 years ago
2
Sequencing Error Rate Estimation in F1 Populations
#19
dcgerard
closed
9 months ago
6
Is mupdog available for half-sib families?
#18
LizPopowski
opened
3 years ago
1
Implemented a different version of the multidog parallel loop
#17
alethere
opened
3 years ago
1
Error with parallel processing with multidog
#16
stephenrkeller
opened
3 years ago
4
Error in foreach loop of multidog - can't find "flexdog_full" function
#15
tpbilton
closed
3 years ago
3
How to get the VCF file
#14
yudizhangzyd
closed
3 years ago
5
Question about Model selection
#13
xuzhougeng
closed
3 years ago
2
Improvement of multidog
#12
alethere
opened
3 years ago
2
Add Vignette on Importing VCF Data
#11
dcgerard
opened
4 years ago
1
Provide in-house Filtering Functions
#10
dcgerard
closed
4 years ago
1
Use drop = FALSE in color scale for plot.updog()
#9
dcgerard
closed
4 years ago
1
Add option to return either NA or the modal prior genotype for 0 read individuals
#8
dcgerard
closed
4 years ago
1
Remove tidyverse from Suggests
#7
dcgerard
closed
4 years ago
0
Multi-SNP input for flexdog()
#6
dcgerard
closed
4 years ago
0
Add `"custom"` option to `flexdog()`
#5
dcgerard
closed
5 years ago
0
Change DBL_EPSILON to DOUBLE_EPS throughout
#4
dcgerard
closed
4 years ago
1
Create snpname argument.
#3
dcgerard
closed
6 years ago
0
Option `model = "f1ppdr"` is very unstable.
#2
dcgerard
closed
6 years ago
1
Not constraining s1pp to have same levels of preferential pairing.
#1
dcgerard
closed
6 years ago
1