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dchaley
/
deepcell-imaging
Tools & guidance to scale DeepCell imaging on Google Cloud Batch
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Add dependencies we need installed
#231
dchaley
closed
1 month ago
0
Update README with git lfs instructions
#230
dchaley
opened
1 month ago
0
Requirements and instructions for running on Mac silicon
#229
dchaley
closed
1 month ago
0
Use new base: 11.8.0-cudnn8-runtime-ubuntu22.04
#228
dchaley
closed
1 month ago
0
Switch container base to rebuilt 2.8.4-gpu image
#227
dchaley
closed
1 month ago
0
Investigate rebuilding TF2.8 container
#226
dchaley
closed
1 month ago
3
Investigate cloud build caching
#225
dchaley
opened
1 month ago
1
Parameterize the BQ table target
#224
dchaley
closed
1 month ago
0
Add script to submit a batch job
#223
dchaley
closed
1 month ago
0
Create entry points for preprocess, infer, and postprocess
#222
dchaley
closed
1 month ago
2
Add script to build new image
#221
dchaley
closed
1 month ago
0
Some logs in Batch show up as errors but aren't
#220
dchaley
closed
3 days ago
2
Generate job directory & job id for benchmark automatically
#219
dchaley
closed
1 month ago
0
Parameterize DeepCell benchmarking BigQuery upload target
#218
dchaley
closed
1 month ago
0
No feedback for job completion
#217
dchaley
opened
2 months ago
0
Add readme to run jobs & sample batch json to new parameters
#216
dchaley
closed
2 months ago
0
Output to a base path, not individual files
#215
dchaley
closed
2 months ago
0
Add 3 retries for spot preemption exit code
#214
dchaley
closed
2 months ago
0
Refactor cmdline args to take base path w/ bools
#213
dchaley
closed
2 months ago
0
Retry batch tasks on spot preemption
#212
dchaley
closed
2 months ago
0
Add command-line parameters to benchmark script
#211
dchaley
closed
2 months ago
0
Copy model to us-central
#210
dchaley
closed
1 month ago
1
Do quick pass on container optimization
#209
dchaley
opened
2 months ago
4
Use smaller tf base image
#208
dchaley
closed
2 months ago
0
Update to results_batch bigquery table
#207
dchaley
closed
2 months ago
0
Set up cloud container build process
#206
dchaley
closed
1 month ago
3
Change benchmark script to upload to batch results table
#205
dchaley
closed
2 months ago
0
Investigate container streaming
#204
dchaley
opened
2 months ago
0
Reduce number of inner loops & cythonize time
#203
dchaley
closed
2 months ago
0
Change benchmark script parameters to command line options
#202
dchaley
closed
2 months ago
0
Set up GCP Batch results table
#201
dchaley
closed
2 months ago
4
Has benchmarking moved to BigQuery?
#200
lynnlangit
opened
2 months ago
0
Fix links in cost estimation worksheet
#199
lynnlangit
closed
2 months ago
2
Benchmark DeepCell on Google Batch with Production Image(s)
#198
lynnlangit
opened
2 months ago
4
Add batch job specs & switch container to central
#197
dchaley
closed
2 months ago
0
Only retry BQ upload on exceeding rate limits
#196
dchaley
closed
2 months ago
0
Stop infinite BQ retry loop
#195
dchaley
closed
2 months ago
0
Fixing type inference & n dimensions
#194
dchaley
closed
2 months ago
0
Replicate or move artifact repo to us-central
#193
dchaley
closed
2 months ago
1
Find way to shrink container
#192
dchaley
closed
2 months ago
10
Add bq upload retries using tenacity
#191
dchaley
closed
2 months ago
0
Add retry / backoff logic for BigQuery upload
#190
dchaley
closed
2 months ago
0
Extract the machine type portion from the qualified string
#189
dchaley
closed
2 months ago
0
Add gcp_service to csv upload
#188
dchaley
closed
2 months ago
0
Populate the gcp_service column in CSV upload
#187
dchaley
closed
2 months ago
1
Get just the machine type from metadata
#186
dchaley
closed
2 months ago
0
Output machine config in results
#185
dchaley
closed
2 months ago
0
Output is_first_run as blank not null
#184
dchaley
closed
2 months ago
0
Run benchmark on Google Batch
#183
dchaley
closed
2 months ago
6
Add method to call metadata server
#182
dchaley
closed
2 months ago
1
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