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dcjones
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proseg
Probabilistic cell segmentation for in situ spatial transcriptomics
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Issue running proseg: assertion failed: end <= axis_len
#42
kbestak
closed
2 weeks ago
9
Errors related to rust sorting
#41
RitaRuoxinLi
closed
3 weeks ago
4
missing pixel inside of cell polygons
#40
Bo-UT
opened
1 month ago
0
CosMx flat file changes?
#39
kescobo
opened
1 month ago
2
Import fails with xeniumranger 3
#38
asmitaL99
opened
1 month ago
1
Imaging Mass Cytometry is Unsupported
#37
DarioS
opened
2 months ago
1
How does Proseg use information of DAPI/Nuclear
#36
wuwenrui555
opened
2 months ago
2
Compatibility with squidpy?
#35
jamesboot
opened
2 months ago
2
MERSCOPE Default Config
#34
marsdenl
closed
1 month ago
9
Proseg crashes or generates poor segmentation with Xenium 5k, CosMx 6k, etc
#33
yihming
opened
2 months ago
25
Thread panicked with z_prob_sum.is_finite() assertion failure
#32
yihming
closed
2 months ago
1
Proseg-to-baysor ParseError("Error while parsing value transcript_id for column 0 at line 0")
#31
devianggr
closed
2 months ago
5
missing gene-column error fix
#30
colganwi
closed
2 months ago
1
Proseg fails to read any transcripts from some .csv.gz files
#29
GBeattie
opened
4 months ago
7
Presence of low counts squares
#28
guigir
opened
4 months ago
1
Visualising polygons
#27
GBeattie
closed
4 months ago
2
Bug, dropping FOVs in polygons
#26
roanvanscheppingen
closed
4 months ago
7
High fraction of cells empty - alert from xeniumranger after import
#25
imran-aifi
opened
4 months ago
2
Viewing 2D non-overlapping cell boundaries in Xenium Explorer with proseg-to-baysor
#24
imran-aifi
closed
4 months ago
2
Overflow Problem in CosMx 6000plex
#23
SanoKyohei
opened
4 months ago
3
Problem with export to Xenium Explorer with proseg-to-baysor
#22
j-bac
closed
4 months ago
1
About spurious coexpression metric for CosMx data
#21
yihming
closed
2 months ago
2
Possible performance issue on CosMx data
#20
yihming
opened
5 months ago
4
Meaning of volume in cell-metadata output
#19
wuwenrui555
closed
4 months ago
2
Shifting centroids / originals not reported
#18
roanvanscheppingen
opened
5 months ago
1
Cell information not transferred
#17
roanvanscheppingen
opened
5 months ago
1
Populuation of cell_metadata is not exactly the same
#16
roanvanscheppingen
opened
5 months ago
2
Different number of transcripts read
#15
roanvanscheppingen
closed
3 months ago
0
stitch-cosmx.jl is not working
#14
roanvanscheppingen
opened
5 months ago
3
plot polygons without overlap
#13
Bo-UT
closed
3 months ago
2
Kernel panic when writing output to disk
#12
canergen
closed
5 months ago
7
converting proseg output into xenium ranger compatible format distorted data
#11
diala-ar
opened
6 months ago
5
Question about output format
#10
SanoKyohei
closed
6 months ago
2
Perimeter-bound and other options
#9
pakiessling
closed
6 months ago
2
protein info from CosMX
#8
cstrlln
opened
6 months ago
1
Prior cell segmentation
#7
Bo-UT
closed
6 months ago
2
Missing FOV column in proseg output files
#6
PietroAndrei
closed
6 months ago
2
Compatibility with MERSCOPE outputs
#5
davidhbrann
closed
6 months ago
2
Downstream cell-type calling Cosmx
#4
roanvanscheppingen
closed
6 months ago
2
issue with the stitch-cosmx.jl script
#3
huayingq1996
closed
6 months ago
1
xenium data issue
#2
williamsdrake
closed
6 months ago
11
Trouble compiling Proseg
#1
pakiessling
closed
6 months ago
1