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dcjones / proseg

Probabilistic cell segmentation for in situ spatial transcriptomics
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Trouble compiling Proseg #1

Closed pakiessling closed 6 months ago

pakiessling commented 6 months ago

Hi, congratulations on the package release and preprint!

I am keen to try out your tool. However I am running into some difficulties. On our HPC compilation fails with linking with cc

I suspect the issue is the old libc version ldd (GNU libc) 2.28

Do you have any recommendation to get this to work? Do you think if I create a Docker/Singularity image based off the official rust image it might fix this?

Ty!

pakiessling commented 6 months ago

Disregard this. Apparently I simply had to load a GCC module prior to the cargo call. Compilation succesful!