Problem with assigning PAUP models

ddarriba / modeltest

Best-fit model selection

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Problem with assigning PAUP models #67

Open AndriiTarieiev opened 5 months ago

AndriiTarieiev commented 5 months ago

Dear developers, There is likely a bug with the model assignment for PAUP on the level of commands. The example is below:

Commands:

phyml -i atpA -m 000000 -f m -v 0 -a 0 -c 1 -o tlr raxmlHPC-SSE3 -s atpA -c 1 -m GTRCATX --JC69 -n EXEC_NAME -p PARSIMONY_SEED raxml-ng --msa atpA --model F81 paup -s atpA iqtree -s atpA -m F81

ddarriba commented 4 months ago

Hi @AndriiTarieiev,

It is, indeed. It should generate either the PAUP block or the sequence of commands. I will suppress the PAUP command output while we make a decision. Thank you for pointing this out.