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ACTIONet
ACTIONet single-cell analysis framework
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Installation issue
#46
sidrahmaryam-cyber
opened
3 months ago
0
When I attempted to convert Seurat to SingleCellExperiment, I encountered an error.
#45
Always-Stude
opened
4 months ago
0
Signed_cluster function using run.ACTIONet()
#44
imev2023
opened
4 months ago
0
Cannot install ACTIONet R
#43
samvidk
opened
5 months ago
1
Does the Python implementation expect raw counts as input?
#42
maarten-devries
opened
1 year ago
0
Pin `scipy` version
#41
maarten-devries
opened
1 year ago
0
Install Error: ACTIONet/src/decomposition/ACTION.cc:2:10: fatal error: cholmod.h: No such file or directory
#40
OYJ-2000
opened
1 year ago
4
Broken link to download datasets.tar.gz in tutorials
#39
LNGDingj
opened
1 year ago
0
updating Makefile to split out environment remove & create
#38
annashcherbina
closed
1 year ago
0
merge r-devel into r-release
#37
annashcherbina
closed
1 year ago
0
How to obtain an adjacency matrix for cluster.graph
#36
joonlee3
opened
1 year ago
3
Can't install anymore
#35
f6v
opened
1 year ago
10
AttributeError: module 'ACTIONet' has no attribute 'pp'
#34
wioxio
opened
2 years ago
1
Error running SingleCellExperiment data
#33
wioxio
opened
2 years ago
3
Update __init__.py
#32
ricomnl
closed
2 years ago
0
Update README.md
#31
annashch-insitro
closed
1 year ago
0
plot.ACTIONet error
#30
najoshi
opened
2 years ago
2
R package loading/linking error
#29
najoshi
closed
2 years ago
2
annotate.cells.using.markers issue
#28
lwhitmore
opened
2 years ago
3
Install error (cholmod.h not found; macOS)
#27
dpcook
closed
2 years ago
4
Installing error Windows 10
#26
yannk-lm
opened
2 years ago
1
AttributeError: module '_ACTIONet' has no attribute 'build_ACTIONet'
#25
pchiang5
opened
2 years ago
1
Installing problems
#24
JaneChik
closed
1 year ago
3
Docker
#23
JaneChik
opened
2 years ago
8
Problem Installing
#22
AB1995UCSF
opened
2 years ago
1
Python devel
#21
annashcherbina
closed
3 years ago
0
Python devel
#20
annashcherbina
closed
3 years ago
1
Python devel
#19
annashcherbina
closed
3 years ago
0
Python devel
#18
annashcherbina
closed
3 years ago
0
Python release
#17
annashcherbina
closed
3 years ago
0
Python devel
#16
annashcherbina
closed
3 years ago
0
Feature: Provide archetypes for SCINET
#15
pstrybol
opened
3 years ago
0
Error drawing with ACE2AnnData and plot.ACTIONet(ace) command
#14
kazushin
opened
3 years ago
2
Detailed documentation required
#13
pstrybol
closed
3 years ago
4
Error in ACTIONet:::.preprocess_marker_labels
#12
pstrybol
closed
3 years ago
3
Update annotation.R
#11
annashch-insitro
closed
3 years ago
1
Build network distance and nn options
#10
annashcherbina
closed
3 years ago
0
specify additional ACTIONet R deps in README
#9
annashch-insitro
closed
3 years ago
2
R release typo fix https://github.com/shmohammadi86/ACTIONet/blob/R-release/R/main.R#L100
#8
annashcherbina
closed
3 years ago
0
R release
#7
annashcherbina
closed
3 years ago
0
fixed assay.name --> assay_name typo
#6
annashcherbina
closed
3 years ago
0
assess.geneset.enrichment.from.archetypes returns 1 fewer genesets than given
#5
dpcook
opened
3 years ago
1
Annotation using markers
#4
Lioscro
closed
3 years ago
7
Error exporting ACE to AnnData
#3
Lioscro
opened
3 years ago
13
Gene set scoring functions don't match vignette
#2
dpcook
opened
3 years ago
2
plot.ACTIONet.archetype.footprint error
#1
tvmathieu
opened
4 years ago
0