deeptools deepTools issues

deeptools / deepTools

Tools to process and analyze deep sequencing data.

Other

684 stars 212 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

ImportError: cannot import name 'colormaps'

#1339 VihanYeh closed 1 minute ago
2
Feature request: Autoscaling

#1338 dgoekbuget opened 1 day ago
0
unsorted multibigwigsummary output file

#1337 mkaustav84 opened 2 days ago
0
Maturin

#1336 WardDeb closed 2 days ago
2
How to plot heatmap is of ATAC-seq sites at gene promoters

#1335 Krithika-Bhuvan opened 3 weeks ago
0
Fix typo in computeMatrix.py

#1334 bounlu closed 1 week ago
0
deeptools computeGCBias is not compatible with plotly 3.0 or later.

#1333 ljw20180420 opened 1 month ago
0
NameError: name 'getSmoothRange' is not defined

#1332 beyondpie opened 1 month ago
1
The documentation of alignmentSieve seems to be wrong.

#1331 ljw20180420 opened 1 month ago
0
Natural sort of sample labels in `plotCoverage`

#1330 bounlu opened 1 month ago
0
Differences in DeepTools Heatmap Resolution Driven by Bed File

#1329 gwc32007 opened 1 month ago
0
ARM osx installation instructions

#1328 WardDeb closed 1 month ago
0
Cannot install deepTools with conda

#1327 sarahbowden closed 1 month ago
9
subset computeMatrix matrix file without computeMatrixOperations

#1326 BioLaoXu opened 1 month ago
0
Np2

#1325 WardDeb closed 1 month ago
1
computeMatrix results in AttributeError: module 'numpy' has no attribute 'NAN'

#1324 yonniejon closed 2 months ago
1
no

#1323 BenxiaHu closed 1 month ago
0
Typo/Bug in heatmapper.py script

#1322 AIqbal94 closed 5 days ago
2
Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

#1321 dependabot[bot] closed 1 month ago
1
Could not install deeptools by conda

#1320 Sum-low closed 1 month ago
3
bw files "No common chromosomes found" when it's from the same species and assemblies

#1319 ShannonTown closed 1 month ago
2
computeMatrix on 2 regions with replicates

#1318 asmariyaz23 opened 4 months ago
0
Does alignmentSieve not support single-ended sequencing data?

#1317 li1311139481 opened 4 months ago
0
How to annotate a region in Heatmap?

#1316 li1311139481 opened 4 months ago
0
Clustering regions in plotHeatmap

#1315 rikrdo89 opened 5 months ago
1
Unexpected keyword argument 'pdd_inches'

#1314 yeeelwy opened 5 months ago
0
bamCoverage [multiBamCoverage]

#1313 z5ouyang opened 6 months ago
1
bamcoverage bedgraph sorting for SEACR

#1312 Rahel14350 closed 6 months ago
0
Documentation clarification needed for `--normalizeUsing` option in `bamCoverage`

#1311 kalavattam opened 6 months ago
0
RNA-seq bam to bw

#1310 Tang-pro opened 6 months ago
0
ISSUES for scaling calculation

#1309 jiangshan529 opened 7 months ago
0
"502 Proxy Error" when using bigwigCompare

#1308 Reb08 closed 7 months ago
1
Using just the read ends in bamCoverage

#1307 gokceneraslan opened 7 months ago
0
What is the samtools flag used in bamPEFragment?

#1306 gerko0914 opened 7 months ago
0
black bars in plotheatmap

#1305 sunta3iouxos closed 7 months ago
3
Version print multibigwigsummary / plotcoverage

#1304 zimoun closed 1 month ago
0
Unable to Install Deeptools via Conda: No Support Found for Python 3.10

#1303 akikuno closed 7 months ago
1
drop bws from plotFingerPrint doc

#1302 WardDeb closed 8 months ago
0
ensure -a/-b are positive

#1301 WardDeb closed 8 months ago
0
ValueError: could not broadcast input array from shape (11000,) into shape (4400,)

#1300 danli349 closed 8 months ago
2
Heatmap plotting and interpretation

#1299 Krithika-Bhuvan closed 8 months ago
1
How to control the color range of the image

#1298 Krithika-Bhuvan closed 8 months ago
2
version boost, and include GRCm39 in ESS docs

#1297 WardDeb closed 8 months ago
0
the conflict about the pheatmap and multibigwigsummary results

#1296 liuyu988 opened 8 months ago
1
v3.5.5

#1295 WardDeb closed 8 months ago
0
github action changes for python 3.7 drop

#1294 WardDeb closed 8 months ago
0
Metagene plot with cis and trans chip-seq signals

#1293 pterzian closed 8 months ago
0
plotHeatmap.py fails because direct matplotlib.tight_layout use was deprecated in matplotlib 3.6.0

#1292 eernst closed 9 months ago
1
ERROR: Could not build wheels for deeptoolsintervals, py2bit, which is required to install pyproject.toml-based projects

#1291 Heather1999 closed 7 months ago
11
plotFingerprint bigwig support

#1290 annajbott opened 9 months ago
1