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deeptools / deepTools

Tools to process and analyze deep sequencing data.
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deeptools k-means clustering #1280

Closed suderiss closed 8 months ago

suderiss commented 1 year ago

Hello everyone,

I have a straightforward query. I generated a heatmap for my ChIP-seq data using deeptools' plotHeatmap function and applied k-means clustering for analysis. Now, I'm eager to identify the specific peaks associated with each cluster. Can you please guide me on how to obtain this information?

Thanks

dpryan79 commented 1 year ago

Have a look at the --outFileSortedRegions option. I think the regions are labeled according to their cluster.