Week 7 Assignment

[jonathanfischer97]

Grading Assessment for Derek Hui

R Script Components

1. Data Loading and DESeq2 Object (1 point)

Score: 1/1

2. VST and PCA Implementation (1 point)

Score: 1/1

3. PCA Interpretation (1 point)

Score: 0.5/1 Feedback:

• Incorrectly attributes PC2 (7%) to age instead of sex

4. Differential Expression Analysis (1 point)

Score: 1/1

5. Sex DE Results (1 point)

Score: 1/1

6. Sex DE Interpretation (1 point)

Score: 1/1

7. Death Classification Analysis (1 point)

Score: 1/1

8. Death Classification Interpretation (1 point)

Score: 1/1

Plot Assessment

1. PCA Plots (1 point)

Score: 1/1

2. Volcano Plot (1 point)

Score: 0.5/1 Feedback:

• Using p-value instead of adjusted p-value for y-axis

Total Score: 9/10