Behaviors at range of S*N

[diazrenata]

Behavior at small S, small N, small N/S, and then increasing:

• number of unique elements (of, say, 10000 draws)
• violins(?) of skewness, Shannon, Simpson
• heatmaps(?)

Dimensions within:

• For small S & N, all possible combinations for which N > S:
  • S <- c(2:10)
  • N <- c(2:19, seq(20, 200, by = 10))
• To explore the broader space, combinations of:
  • Large S, moderate N:
    • S <- c(10, 20, 30, seq(50, 250, by = 50))
    • N <- seq(50, 250, by = 50)
  • Moderate S, large N:
    • S <- c(seq(5, 40, by = 5), 50, 75)
    • N <- c(seq(500, 2500, by = 500), 5000, 7500)
    • Exclude combinations of S > 40, N > 2500.

[diazrenata]

https://github.com/diazrenata/scads/tree/vast-drake

[diazrenata]

https://github.com/diazrenata/scads/blob/vast-drake/reports/vast-space.md

At this point I think it actually doesn't make a huge amount of sense to compare diversity indices across dramatically different S and N? I'm very confused why avg skewness seems to decrease and diversity increase as you add individuals at high N.