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dib-lab / genome-grist

map Illumina metagenomes to genomes!
https://dib-lab.github.io/genome-grist/
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prioritize genomes found in previous samples when running genome grist #291

Open clb21565 opened 1 year ago

clb21565 commented 1 year ago

not sure if this is baked in already, but when running many samples from the same experiment, it would be nice if the same species/strain genome representative was prioritized for each sample in the set before picking a different closely related genome

ctb commented 1 year ago

yeah, we struggle with this a bit in general. One thing you can do is put a database of the previously found genomes first on the sourmash_databases list - that might help. Please leave this open and I will see if I can test it and give you more guidance.

clb21565 commented 1 year ago

thanks! currently I am just handling it on the back end by clustering the genomes of interest. it works OK.