Auto-generated Pull Request for feat/phenotype-loader

[github-actions[bot]]

Pulling 'feat/phenotype-loader into develop. Please review and merge.

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 19.64286% with 45 lines in your changes are missing coverage. Please review.

Project coverage is 87.19%. Comparing base (54b59e4) to head (c404359). Report is 3 commits behind head on develop.

Additional details and impacted files

[](https://app.codecov.io/gh/dictyBase/modware-import/pull/387?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=dictyBase) ```diff @@ Coverage Diff @@ ## develop #387 +/- ## =========================================== - Coverage 87.91% 87.19% -0.72% =========================================== Files 15 15 Lines 1365 1382 +17 =========================================== + Hits 1200 1205 +5 - Misses 159 171 +12 Partials 6 6 ``` | [Files](https://app.codecov.io/gh/dictyBase/modware-import/pull/387?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=dictyBase) | Coverage Δ | | |---|---|---| | [internal/datasource/xls/phenotype/annotation.go](https://app.codecov.io/gh/dictyBase/modware-import/pull/387?src=pr&el=tree&filepath=internal%2Fdatasource%2Fxls%2Fphenotype%2Fannotation.go&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=dictyBase#diff-aW50ZXJuYWwvZGF0YXNvdXJjZS94bHMvcGhlbm90eXBlL2Fubm90YXRpb24uZ28=) | `93.93% <84.61%> (-6.07%)` | :arrow_down: | | [internal/datasource/xls/phenotype/reader.go](https://app.codecov.io/gh/dictyBase/modware-import/pull/387?src=pr&el=tree&filepath=internal%2Fdatasource%2Fxls%2Fphenotype%2Freader.go&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=dictyBase#diff-aW50ZXJuYWwvZGF0YXNvdXJjZS94bHMvcGhlbm90eXBlL3JlYWRlci5nbw==) | `0.00% <0.00%> (ø)` | |

[cybersiddhu]

The subsequent concerns were addressed with the pull request:

• Variable number of columns, where most files had ten columns while the remainder had twelve, including strain descriptor information. Rectified.
• Inconsistent naming of files; this has been standardized to a uniform naming convention for extracting annotation dates. Fixed
• Erroneous prefix employed in the environment ontology term identifier. Handled accordingly.
• Column devoid of any phenotype annotation, containing only author names. Rectified.
• The Assay ID column erroneously comprised strain characteristic identifiers rather than Assay Ontology IDs; this discrepancy has been rectified.
• A singular file, "Phenotype_annotation_NOV_15_2023.xlsx," incorporating superfluous "Parent ID" and "Genotype" columns. The attached author lacks an email address, rendering the file incompatible for loading.