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didymo / OnkoDICOM

OnkoDICOM was created with Radiation Oncologists to allow Radiation Oncologists to do research on DICOM standard image sets (DICOM-RT, CT, MRI, PET) using open source technologies, such as pydicom, dicompyler-core, PySide6, PIL, and matplotlib. OnkoDICOM is cross platform, open source software, and welcomes contributions. OnkoDICOM was inspired by dicompyler.
https://onkodicom.com.au
GNU Lesser General Public License v2.1
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Task 1 - XR Files #290

Closed danielhorton4001 closed 1 year ago

danielhorton4001 commented 1 year ago

Sample file IM000001 can be opened and have a temporary rtss applied. Files IM000002 through 4 cannot be opened.

Phil made the RTSTURCT function.

sjswerdloff commented 1 year ago

Very good draft pull request.

sjswerdloff commented 1 year ago

The pyradiomics issue is one for the maintainers to work out. I've submitted a PR to pyradiomics to get them to fix the issue with metadata in pyradiomics 3.1.0.

sjswerdloff commented 1 year ago

Please fetch and pull from upstream master (to address pyradiomics issue and the poetry.lock issue)

sjswerdloff commented 1 year ago

Yeah! All checks have passed, so the master branch is a known good starting point. And... @danielhorton4001 your changes have all passed tests as well. Please move forward on using Photometric Interpretation (and drop me a line if you would like any assistance).

danielhorton4001 commented 1 year ago

Still need to fix up xrStruct.py, but everything else (including functionality with the other sample files) is in.

sjswerdloff commented 1 year ago

Still need to fix up xrStruct.py, but everything else (including functionality with the other sample files) is in.

please do this in a separate PR.