dieterich-lab JACUSA2 issues

dieterich-lab / JACUSA2

New version of JACUSA -> 2.0

GNU General Public License v3.0

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issues

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Phred quality score

#30 CDieterich opened 4 years ago
1
JACUSA2 call-2 Exception

#29 qwang-big closed 3 years ago
11
Analysis of MazF data

#28 CDieterich closed 3 years ago
2
JACUSA2 strand problem

#27 CDieterich closed 4 years ago
2
RT-arrest stranded read counts

#26 CDieterich closed 4 years ago
0
Logging Levels

#25 qwang-big opened 5 years ago
1
Exception on contig KI270544.1:1-1201

#24 qwang-big closed 5 years ago
2
early termination of lower-case reference file

#23 qwang-big closed 5 years ago
1
from RC10

#22 qwang-big closed 5 years ago
0
call-1

#21 CDieterich closed 5 years ago
1
Consistent column for score and p_value

#20 piechottam closed 3 years ago
0
Galaxy wrapper for JACUSA

#19 piechottam opened 5 years ago
0
Wrong formatting of SAM tag CLI options

#18 piechottam closed 5 years ago
0
duplicate CLI: -D -s

#17 piechottam closed 5 years ago
1
Please provide some basic documentation

#16 CDieterich closed 4 years ago
5
rt-arrest discussion

#15 CDieterich closed 5 years ago
8
call2 with -B A2G crashes on RNA/DNA

#14 CDieterich closed 5 years ago
2
call-2 on DNA / RNA comparisons crashes

#13 CDieterich closed 5 years ago
2
PEPseq run failed with 2.0.0-BETA25 (junit)

#12 CDieterich closed 6 years ago
0
RefBase / ReadBase mismatch

#11 CDieterich closed 6 years ago
2
Homopolymer filter

#10 CDieterich closed 6 years ago
1
Trans-splicing cannot be processed correctly

#9 piechottam closed 6 years ago
1
Output orientation is wrong for paired-end data

#8 CDieterich closed 6 years ago
0
Schragi JAR

#7 CDieterich closed 6 years ago
1
call-2 seems broken

#6 CDieterich closed 6 years ago
1
/tmp/ running full

#5 tjakobi closed 6 years ago
4
Threads gone mad

#4 CDieterich closed 6 years ago
7
Unrecognized option: -a

#3 CDieterich closed 6 years ago
1
Unrecognized option: -s

#2 CDieterich closed 6 years ago
1
What is the difference between -B and -D ?

#1 CDieterich closed 6 years ago
2