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dina-lab3D / CombFold

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dataset #12

Open zhangjuan233 opened 2 months ago

zhangjuan233 commented 2 months ago

Hello, may I ask where I can obtain the PDB files mentioned in the paper's datasets?

ben-shor commented 1 month ago

Hi, could you specify which PDB are you referring to? Among the first 2 benchmarks - the best-assembled result of each PDB job is supplied here: https://github.com/dina-lab3D/CombFold/blob/master/paper_resources/extras/top1_benchmark_1_2_pdbs.zip

If you are referring to all the subcomplexes from which we have generated subunits/transformations, it is a lot of data so it will be problematic to supply all of it, but upon request I may be able to provide at least the PDB files for one of them.

Let me know what are you are trying to show/do and I may have a better idea of how to help.

Ben