dinkum-bio / dinkum

very simple cis-regulatory gene regulatory network simulation
GNU Affero General Public License v3.0
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how do we support big models? #43

Open ctb opened 1 month ago

ctb commented 1 month ago

notebooks aren't great for diffs, but they're great ways to support experimentation.

perhaps want to provide a template repo that installs dinkum, runs any and all notebooks, and saves the results for display.

for big models, how well would it work to put the model in a .model file or something, and then execfile it? Then the notebooks can explore various views of that model, but the model itself is centralized... could provide a separate file containing custom activation functions...