the --stand_call_conf and --stand_emit_conf parameter's difference

dnaase / Bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

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the --stand_call_conf and --stand_emit_conf parameter's difference #7

Open ryomawave opened 5 years ago

ryomawave commented 5 years ago

I found some site's depth is lower than 20 in my snp output file when I used the default --stand_call_conf and --stand_emit_conf parameter.