Updating the required depth to 2 in config.

dnanexus-rnd / GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects

Apache License 2.0

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Updating the required depth to 2 in config. #310

Open kishwarshafin opened 6 months ago

kishwarshafin commented 6 months ago

Hello,

Requesting this change because the required_dp: 0 in the config creates a lot of 0/0 calls in the gVCF files. Updating this to 2 removes the redundant lines.