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dnanexus-rnd
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GLnexus
Scalable gVCF merging and joint variant calling for population sequencing projects
Apache License 2.0
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The inconsistent output of GLnexus, labeling no call to '0/0'
#263
sujunhao
closed
3 years ago
2
migrate CI to GitHub
#262
mlin
closed
3 years ago
0
recalibrate allele frequency prior for DeepVariant
#261
mlin
closed
3 years ago
0
Failed to initialize database
#260
Asppagh
opened
3 years ago
1
Error message: PL vector length 2, expected 3 - did the job failed?
#259
antoniocampos13
opened
3 years ago
5
The model underlying GLnexus calling
#258
Axze-rgb
opened
3 years ago
1
GLnexus output
#257
Fred-07
opened
3 years ago
1
Resuming Merging of GVCFs
#256
meghatron21
closed
3 years ago
1
VAF liftover_field to pVCF
#255
bopohdr
opened
3 years ago
2
Incorrect variant call
#254
marchoeppner
closed
3 years ago
3
bucket size should be in (1,1e9]
#253
dridk
closed
3 years ago
1
question about --bed
#252
brentp
closed
3 years ago
2
gVCF ordering
#251
meghatron21
opened
3 years ago
1
AVX Instructions and jemalloc
#250
brand-fabian
opened
3 years ago
4
genotyper_config::top_two_half_calls
#249
mlin
closed
3 years ago
1
Copying applet to target directory
#248
meghatron21
opened
3 years ago
1
allele fequency calculation
#247
lahage
opened
3 years ago
11
gvcf_manifest issues
#246
meghatron21
opened
3 years ago
3
Bulk load error
#245
mellowo
opened
3 years ago
0
Use character literal for std::string::find
#244
xunjieli
closed
3 years ago
1
Assertion `end_offset >= start_offset' failed
#243
hurleyLi
opened
3 years ago
0
Running out space
#242
leorippel
opened
3 years ago
4
Deepvariant vfc merge fail with docker
#241
loipf
closed
3 years ago
3
Working without SSD
#240
OgnjenMilicevic
closed
3 years ago
2
Merge Error with Octopus GVCFs
#239
DiDeoxy
opened
3 years ago
0
combine gvcf files with different contigs
#238
hurleyLi
opened
3 years ago
3
add max_alleles_per_site to 32 for deep variant
#237
xquek
closed
3 years ago
2
GLnexus.DB
#236
xshah
opened
3 years ago
1
Support for Octopus VCF files
#235
DiDeoxy
opened
3 years ago
5
Octopus joint genotyping config
#234
DiDeoxy
opened
3 years ago
5
N+1 calling
#233
danchubb
opened
3 years ago
9
Deepvariant gvcfs merge error
#232
Johnnywang92
opened
3 years ago
1
What assumptions remain if one deactivate the specific filters
#231
ghost
opened
3 years ago
1
Improve handling haploid calls
#230
VorontsovIE
opened
3 years ago
2
Add preset 'DeepVariant_unfiltered', analogous to 'gatk_unfiltered', etc.
#229
tedyun
closed
3 years ago
3
container error
#228
paniscusJr
opened
4 years ago
1
IOError: reading gVCF header
#227
zoeluo15
closed
4 years ago
2
Why was this site rejected
#226
ghost
opened
4 years ago
1
No space on device error
#225
jimhavrilla
closed
4 years ago
21
QUAL score correlating to number of variant samples?
#224
ghost
opened
4 years ago
5
Genotype column name
#223
jimhavrilla
opened
4 years ago
3
Fix typo AQ-->AF in error message
#222
VorontsovIE
closed
4 years ago
3
tech debt: unaligned capnproto messages from rocksdb
#221
mlin
opened
4 years ago
0
Error vcf exists check log
#220
ghost
opened
4 years ago
3
tech debt: upgrade testOutputVcf.py to python3
#219
mlin
closed
4 years ago
0
`GLIBC_2.18' not found
#218
szhang0112
opened
4 years ago
17
missing recorder from GLnexus result
#217
hurleyLi
closed
4 years ago
3
Using GLNexus to merge GATK gVCFs
#216
edg1983
opened
4 years ago
3
Het site 0/1 becoming ./. in the pVCF
#215
ghost
closed
4 years ago
2
Docker build failed
#214
ghost
opened
4 years ago
5
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