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drighelli / SpatialExperiment

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Error in creating `RemoteSpatialImage` #132

Closed lgeistlinger closed 2 years ago

lgeistlinger commented 2 years ago

Trying to create a remote spatial image around a CyCIF mask on Bioconductor's OpenStorageNetwork, but running into a problem: 

> f <- "https://mghp.osn.xsede.org/bir190004-bucket01/TMA11/segmentation/cell_masks/1.tif"
> SpatialExperiment::SpatialImage(f, is.url = TRUE)
3007 x 3007 (width x height) RemoteSpatialImage
Error in .local(x, ...) : argument "path" is missing, with no default
LiNk-NY commented 2 years ago

I also see this error when I run the first example in test_SpatialImage-methods.R: 

suppressPackageStartupMessages(library(SpatialExperiment))
url <- "https://i.redd.it/3pw5uah7xo041.jpg"
spi <- new("RemoteSpatialImage", url=url)
spi
#> 1200 x 1186 (width x height) RemoteSpatialImage
#> Error in .local(x, ...): argument "path" is missing, with no default

Created on 2022-11-21 with reprex v2.0.2

HelenaLC commented 2 years ago

Apologues, PR #113 should have resolved this & is awaiting moderation.

HelenaLC commented 2 years ago

Should be resolved with the next Bioc built (on devel for now)...