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dsarov / ARDaP

Comprehensive resistance detection from WGS data
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Something wrong with Trimmomatic #12

Closed vlgShpak closed 4 years ago

vlgShpak commented 5 years ago

Hello! I have installed ARDaP on my desktop. Unfortunately I always catch some kind of Trimmomatic error. I have attached the output to this message. log.txt

dsarov commented 4 years ago

Hi vlgShpak,

I think it is just to do with the way you are calling the software. Try renaming your reads to end with the suffix _1.fastq.gz and _2.fastq.gz and see how you go with the default parameters.

You can probably change the --fastq flag as well to --fastq "*_{001,002}.fastq.gz"