Open z5ouyang opened 5 years ago
After many tries, it seems like the parameter "clusters" can NOT be NULL, I provide the Seurat "X@ident" to "clusters", then it successfully complete. Guess it is a temporal solution.
Thanks for sharing this. I am not sure where the issue comes from since it seems it was able to use the SingleR clusters in both references, and the error comes only later. However, there is no use of clusters afterward in the code.
Thanks for developing this tools. I am following the case 2. by providing the member of the Seurat object (X): Do you have any suggestion?
singler <- CreateSinglerObject(as.matrix(X@raw.data), annot = NULL, project.name="Lung10X",min.genes = 0,