Open LouiseDck opened 9 months ago
According to the vignette, this is the way to create a knockdown simulation: 0
b3_genes <- model_common$feature_info %>% filter(module_id == "B3") %>% pull(feature_id) model_ko <- model_common model_ko$simulation_params$experiment_params <- simulation_type_knockdown( num_simulations = 100L, timepoint = 0, genes = b3_genes, num_genes = length(b3_genes), multiplier = 0 )
However, when there are multiple genes associated with the module, this did not work and produced relating to incompatible sizes in tibble(). This is due to the checks performed in simulation_type_knockdown.
tibble()
Fixes #56 Fixes #45
According to the vignette, this is the way to create a knockdown simulation: 0
However, when there are multiple genes associated with the module, this did not work and produced relating to incompatible sizes in
tibble()
. This is due to the checks performed in simulation_type_knockdown.Fixes #56 Fixes #45