dynwrap 1.2.2

[rcannood]

• MAJOR CHANGE convert_milestone_percentages_to_progressions(): Rewrite implementation to attain significant speedup.

• MINOR CHANGE infer_trajectory(): Infer command (Rscript/python) from file extension if possible and avoid using shebang to execute script, because R CMD check for R 4.0 puts Rscript and R dummy executables on the path before R CMD check. This means #!/usr/bin/env Rscript does not work anymore.

• MINOR CHANGE add_feature_importance(): Add a function for adding feature importance scores to a trajectory.

• BUG FIX project_waypoints(): Rename milestone waypoints such that the names are unique.

• BUG FIX infer_trajectory(): Fix error message printing.

• BUG FIX: dyndimred is used conditionally.

• BUG FIX: wrap_expression() and add_expression(): Do not override feature_info when it already exists in dataset.

[codecov[bot]]

Codecov Report

Merging #159 (59d4203) into master (2dfaee7) will decrease coverage by 0.42%. The diff coverage is 80.99%.

:exclamation: Current head 59d4203 differs from pull request most recent head d2f4605. Consider uploading reports for the commit d2f4605 to get more accurate results

@@            Coverage Diff             @@
##           master     #159      +/-   ##
==========================================
- Coverage   84.59%   84.16%   -0.43%     
==========================================
  Files          42       43       +1     
  Lines        2428     2495      +67     
==========================================
+ Hits         2054     2100      +46     
- Misses        374      395      +21     

Impacted Files	Coverage Δ
R/method_create_ti_method_container.R	89.65% <ø> (+1.72%)	:arrow_up:
R/method_create_ti_method_definition.R	0.00% <0.00%> (ø)
R/method_create_ti_method_r.R	78.12% <ø> (ø)
R/method_get_ti_methods.R	0.00% <0.00%> (ø)
R/method_infer_trajectory.R	80.26% <ø> (ø)
R/wrap_add_feature_importance.R	0.00% <0.00%> (ø)
R/wrap_add_prior_information.R	85.32% <23.52%> (ø)
R/wrap_add_end_state_probabilities.R	92.68% <50.00%> (ø)
R/method_execute.R	93.26% <83.33%> (+0.06%)	:arrow_up:
R/wrap_add_pseudotime.R	85.71% <85.71%> (+0.52%)	:arrow_up:
... and 24 more

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