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dzhakparov / GeneSelectR

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Hi, #16

Open yh1028 opened 7 months ago

yh1028 commented 7 months ago

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GENE_SYMBOL | JUN | ZFP36 | IER3 | TPD52 | EGFR | PPP1R15A | CDKN1A | COL1A1 | ATF3 | SDC3 | ADM | COL5A1 | NFIL3 | ISG20 | MAFF | IL6 | FOSL2 | PDK1 | HAS1 | PCK1 | IRS2 | FOS | VEGFA | TIPARP | ANGPTL4 -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- 0 | 11.98205 | 11.54816 | 10.30092 | 5.52009 | 7.954653 | 9.518893 | 9.221612 | 10.9577 | 9.831654 | 6.79904 | 11.04336 | 8.947844 | 10.80185 | 3.974111 | 7.991565 | 7.611628 | 8.205616 | 6.437472 | 9.580678 | 7.328136 | 8.617707 | 12.95069 | 7.841146 | 10.70958 | 8.214914 0 | 11.58223 | 11.84106 | 10.35586 | 4.381745 | 9.072858 | 9.575936 | 10.74258 | 9.590491 | 10.29403 | 6.776857 | 10.16141 | 8.04759 | 11.69233 | 4.596289 | 8.813059 | 8.604491 | 8.516798 | 6.373668 | 11.37962 | 8.580651 | 9.526781 | 12.16274 | 9.603856 | 10.71843 | 8.33238 0 | 13.03902 | 12.18712 | 10.30461 | 6.807254 | 8.883296 | 10.43202 | 10.54469 | 10.20393 | 10.4223 | 7.320506 | 11.05275 | 7.374774 | 11.57956 | 3.891583 | 8.764461 | 7.037673 | 8.018602 | 4.97001 | 9.642097 | 8.966034 | 9.668477 | 13.04271 | 9.085205 | 10.21004 | 7.123808 0 | 11.62456 | 12.23376 | 11.76651 | 6.685894 | 8.498706 | 10.41766 | 11.0894 | 10.59481 | 10.38521 | 5.887733 | 10.87238 | 9.221717 | 11.10004 | 4.596289 | 8.708427 | 9.441013 | 7.853619 | 4.583079 | 11.22919 | 7.502444 | 9.560578 | 11.50303 | 9.685882 | 10.29784 | 9.219313 0 | 12.11322 | 12.50315 | 12.33384 | 6.868725 | 8.286445 | 10.92419 | 11.01943 | 9.945247 | 11.75895 | 8.2506 | 11.62753 | 8.57457 | 11.30008 | 4.127176 | 8.906935 | 10.09061 | 8.096109 | 4.513313 | 11.19218 | 8.218341 | 9.216624 | 12.06201 | 10.84158 | 10.52503 | 10.22635 0 | 12.3948 | 12.9291 | 10.5545 | 6.328818 | 9.18395 | 9.373313 | 10.86888 | 9.833838 | 11.45748 | 7.494149 | 11.526 | 8.575715 | 11.69849 | 3.712226 | 8.865937 | 10.05152 | 5.93533 | 3.497987 | 10.88574 | 7.316005 | 9.638451 | 12.66978 | 10.59576 | 10.68168 | 8.780788 0 | 12.77288 | 13.11625 | 13.30136 | 6.083019 | 8.388219 | 10.7738 | 10.88778 | 10.31213 | 11.03268 | 5.310532 | 12.74866 | 8.478135 | 10.97216 | 4.569024 | 9.440025 | 12.0673 | 8.559402 | 5.952269 | 10.45694 | 6.15798 | 7.882645 | 12.79795 | 11.54389 | 9.811676 | 11.71646 0 | 11.98241 | 12.60841 | 13.18932 | 6.2839 | 8.660926 | 9.857054 | 11.47607 | 13.746 | 11.06659 | 6.833123 | 12.17031 | 10.43068 | 11.25065 | 4.891092 | 9.717448 | 12.5916 | 8.376346 | 5.697194 | 11.87115 | 7.031373 | 9.156435 | 11.59793 | 11.49132 | 10.5773 | 12.03397 0 | 11.75064 | 12.11473 | 9.954992 | 5.566547 | 8.615854 | 9.421816 | 10.39283 | 9.948677 | 9.918119 | 8.258444 | 11.08588 | 8.382982 | 11.52295 | 4.51303 | 8.366741 | 7.398513 | 7.928581 | 3.92829 | 11.33999 | 10.39711 | 9.309213 | 11.88928 | 9.934733 | 9.74659 | 8.911513 0 | 11.6044 | 11.78438 | 9.792656 | 6.34639 | 8.402663 | 9.366212 | 9.938472 | 10.98742 | 10.34062 | 7.793836 | 10.83437 | 8.66193 | 10.83802 | 4.675348 | 8.480453 | 7.200242 | 8.440774 | 5.165608 | 8.873845 | 7.997076 | 9.144876 | 11.67516 | 8.926471 | 10.42963 | 8.41939 0 | 11.68722 | 12.11144 | 10.79786 | 6.385257 | 7.55492 | 8.378384 | 10.29338 | 13.56043 | 9.941331 | 8.108981 | 8.749831 | 10.67098 | 10.74104 | 5.26509 | 8.414498 | 9.662593 | 7.924657 | 4.105693 | 10.53146 | 4.514845 | 8.686882 | 12.04121 | 9.635925 | 9.535329 | 9.077804 0 | 11.08094 | 10.79125 | 10.13882 | 5.039641 | 8.411467 | 8.259931 | 8.826445 | 11.69865 | 8.684231 | 8.137919 | 12.05488 | 8.729708 | 9.390245 | 2.969686 | 7.701403 | 6.440503 | 7.173504 | 3.453043 | 9.987235 | 7.438247 | 8.996991 | 8.420803 | 8.110307 | 8.957826 | 8.366553 0 | 12.54677 | 11.60057 | 8.683024 | 6.347189 | 8.796067 | 8.242937 | 9.268177 | 8.668805 | 8.248786 | 7.107231 | 11.98967 | 7.519795 | 10.12195 | 3.874122 | 8.495328 | 6.475293 | 6.716327 | 3.841305 | 6.907242 | 11.42775 | 10.28416 | 12.53519 | 10.94754 | 8.841433 | 8.849684 0 | 10.63956 | 11.77145 | 11.84884 | 5.577667 | 8.211472 | 9.346435 | 11.79033 | 7.649723 | 9.578114 | 4.252069 | 10.59565 | 8.744535 | 10.08938 | 7.052244 | 8.672333 | 11.64826 | 7.8776 | 4.249758 | 12.01977 | 3.440302 | 8.631853 | 11.60706 | 11.52091 | 9.882291 | 12.24019 0 | 12.83981 | 12.83974 | 12.40285 | 5.589649 | 8.624292 | 8.797922 | 11.41629 | 9.616471 | 10.64061 | 8.354546 | 11.85076 | 9.489364 | 11.36549 | 4.213164 | 9.009138 | 10.86638 | 7.851882 | 3.897195 | 10.46705 | 8.814148 | 9.989336 | 13.04188 | 10.78635 | 10.24332 | 11.7572 0 | 11.50231 | 11.25974 | 7.606689 | 6.030501 | 9.374201 | 8.968182 | 9.782773 | 9.808521 | 8.65255 | 6.350558 | 9.678275 | 7.218699 | 11.78734 | 3.184492 | 8.015733 | 6.437981 | 8.887441 | 5.614619 | 11.48881 | 9.632152 | 9.203358 | 10.49671 | 8.978507 | 11.12553 | 8.243426 0 | 10.5113 | 9.957826 | 9.119724 | 5.4828 | 7.896094 | 9.150038 | 8.743047 | 13.63614 | 7.104702 | 9.02431 | 9.765322 | 10.59969 | 7.971376 | 3.245694 | 6.515724 | 4.762508 | 6.856849 | 4.231866 | 8.834027 | 3.11158 | 8.407881 | 9.440102 | 6.524042 | 9.176808 | 8.853309 0 | 12.91365 | 12.93521 | 12.49747 | 6.194725 | 7.800674 | 10.80676 | 10.46405 | 13.09648 | 11.15918 | 9.022132 | 10.53314 | 10.02038 | 11.31108 | 2.655782 | 9.344536 | 9.633343 | 7.278125 | 3.756949 | 9.960603 | 4.444202 | 8.59625 | 13.44186 | 8.306185 | 11.25544 | 7.96621 0 | 13.14716 | 12.96626 | 12.12548 | 4.544864 | 8.166644 | 11.05616 | 10.50851 | 12.8396 | 11.33139 | 8.64182 | 10.46131 | 9.864434 | 11.29217 | 3.547032 | 9.228507 | 9.315739 | 7.350537 | 4.058403 | 10.33315 | 2.566051 | 8.700257 | 13.58094 | 8.205461 | 11.21705 | 7.656994 0 | 11.34763 | 12.77195 | 11.69232 | 6.206653 | 7.750377 | 10.56791 | 11.40652 | 11.74898 | 12.02818 | 8.078151 | 9.358894 | 8.691279 | 12.16803 | 2.44665 | 8.710332 | 11.65056 | 8.614686 | 3.791365 | 12.22222 | 9.322096 | 8.974717 | 12.9213 | 10.2845 | 10.76942 | 10.48103 1 | 11.13825 | 9.971035 | 9.624909 | 7.599512 | 7.26873 | 7.748208 | 8.5109 | 13.3248 | 8.001037 | 8.533688 | 9.444237 | 9.727743 | 8.625931 | 7.988901 | 7.514411 | 7.626023 | 6.448719 | 3.954684 | 9.864577 | 4.95387 | 8.000827 | 11.72366 | 7.967325 | 9.479123 | 7.754605 1 | 11.27558 | 10.82179 | 10.20919 | 8.743601 | 7.722729 | 8.384116 | 8.666073 | 12.8282 | 8.38116 | 9.054618 | 8.592313 | 9.603396 | 8.630246 | 6.513171 | 7.905342 | 8.455008 | 6.235902 | 4.600014 | 8.120651 | 4.70865 | 8.204256 | 11.88461 | 7.074741 | 8.659562 | 6.568305 1 | 11.53408 | 10.92859 | 10.37333 | 7.111125 | 7.325463 | 8.940395 | 8.903445 | 14.29014 | 8.941587 | 9.389198 | 10.04206 | 11.30635 | 8.38288 | 5.40249 | 8.13302 | 7.678212 | 6.047815 | 6.264342 | 7.193607 | 2.002823 | 8.345511 | 11.87569 | 8.981762 | 8.634313 | 6.874999 1 | 10.8787 | 10.58711 | 9.627258 | 8.219682 | 7.345445 | 7.922743 | 8.631008 | 13.53864 | 8.08194 | 8.927375 | 8.983269 | 10.37184 | 8.598037 | 9.244571 | 7.669795 | 7.913036 | 6.782952 | 6.852855 | 8.983585 | 1.856317 | 7.581512 | 10.99562 | 8.969953 | 9.05394 | 8.792959 1 | 9.9108 | 10.32586 | 9.006166 | 9.02179 | 7.080391 | 7.26465 | 9.081724 | 13.22652 | 7.985123 | 10.0888 | 8.150866 | 10.25138 | 8.17988 | 7.312383 | 7.458874 | 7.504173 | 4.880647 | 7.164447 | 8.391018 | 0.328674 | 7.856427 | 7.714969 | 8.449067 | 8.831036 | 8.598964 1 | 9.304433 | 9.740672 | 9.106262 | 6.961793 | 8.148267 | 6.208891 | 8.484236 | 12.50445 | 7.59808 | 8.710387 | 9.433596 | 9.459053 | 8.436214 | 5.119899 | 6.834492 | 6.256333 | 5.766106 | 4.774412 | 8.256876 | 5.606378 | 7.98433 | 8.688749 | 7.347089 | 9.28998 | 7.716198 1 | 10.45811 | 10.60948 | 8.798527 | 7.501555 | 7.705426 | 7.708679 | 9.076455 | 14.09544 | 7.829359 | 9.957839 | 8.589491 | 11.5389 | 8.583555 | 5.020014 | 7.488155 | 7.631128 | 5.734673 | 4.649673 | 7.703945 | 1.038988 | 8.412048 | 9.860505 | 8.544624 | 8.895305 | 7.451769 1 | 10.03537 | 10.30091 | 9.471641 | 7.456818 | 6.621013 | 7.511032 | 8.797886 | 13.38495 | 7.470482 | 9.945224 | 8.527342 | 10.38153 | 8.636154 | 7.922317 | 7.13726 | 7.810503 | 6.147272 | 5.23271 | 8.599558 | 1.292509 | 8.16237 | 9.720171 | 8.064832 | 8.380285 | 8.631272 1 | 10.37931 | 10.24642 | 8.996822 | 8.098793 | 7.876929 | 7.368342 | 9.409068 | 13.72848 | 7.59938 | 9.766131 | 9.308797 | 10.87709 | 8.987451 | 6.196816 | 7.233812 | 6.091863 | 6.859216 | 6.923461 | 6.57412 | 1.856317 | 8.688484 | 9.561062 | 7.229334 | 9.065021 | 8.072978 1 | 9.820791 | 10.14734 | 10.3395 | 7.823411 | 7.083477 | 7.4573 | 9.1207 | 13.19864 | 8.149537 | 9.262745 | 8.073202 | 10.20776 | 8.484171 | 5.195464 | 7.389093 | 8.586797 | 5.984148 | 4.995936 | 10.63264 | 6.249473 | 7.817121 | 8.216349 | 8.005109 | 8.378249 | 8.524667 1 | 10.28626 | 10.08893 | 9.977763 | 7.054032 | 8.044642 | 8.119568 | 9.596118 | 12.09274 | 8.808098 | 8.051128 | 8.851022 | 9.264304 | 9.161887 | 7.015545 | 8.439272 | 8.020511 | 3.839258 | 4.558523 | 9.197404 | 6.851555 | 8.865602 | 9.684348 | 7.466294 | 8.555954 | 8.489794 1 | 11.08493 | 11.05155 | 9.227412 | 6.734788 | 8.784494 | 8.53455 | 9.110357 | 11.94461 | 8.393002 | 8.697277 | 10.03652 | 9.413602 | 8.09298 | 3.755718 | 8.278206 | 6.209446 | 4.896009 | 4.937546 | 8.949453 | 1.316252 | 8.531217 | 10.26037 | 7.460291 | 9.351435 | 6.971378 1 | 10.40821 | 10.08617 | 9.730766 | 7.174354 | 7.706369 | 7.590394 | 8.869611 | 12.56692 | 8.216141 | 9.770913 | 9.587358 | 10.74126 | 8.947908 | 6.418957 | 7.566587 | 9.370748 | 6.670059 | 6.392667 | 7.592312 | 2.753581 | 7.731861 | 8.413551 | 8.069624 | 8.781438 | 7.799368 1 | 10.53669 | 10.07306 | 10.40276 | 7.383599 | 7.448938 | 7.45594 | 8.661416 | 11.76411 | 7.938087 | 8.838149 | 8.560297 | 9.293367 | 8.26194 | 6.867781 | 7.649661 | 7.609262 | 6.447664 | 5.670161 | 9.478615 | 2.631448 | 7.422863 | 9.966281 | 9.181608 | 8.966809 | 7.909425 1 | 10.6724 | 10.67855 | 8.291954 | 7.2153 | 8.582045 | 8.087317 | 9.397452 | 11.40256 | 9.183018 | 5.852387 | 10.33909 | 8.977936 | 9.921924 | 5.657472 | 8.980167 | 6.742362 | 6.61465 | 4.855599 | 7.37398 | 8.9557 | 9.57953 | 9.221147 | 9.063013 | 9.389247 | 8.449026 1 | 10.864 | 10.36048 | 9.149559 | 8.113727 | 7.544777 | 7.708309 | 8.823296 | 12.9531 | 8.462657 | 8.588629 | 9.493317 | 10.42448 | 9.569847 | 7.673193 | 7.249532 | 7.139992 | 6.93269 | 6.521309 | 9.268243 | 3.734239 | 8.465074 | 8.789992 | 7.999965 | 9.509434 | 8.704564 1 | 9.06923 | 10.23848 | 9.692147 | 9.123055 | 7.105561 | 7.99674 | 8.876177 | 11.68361 | 7.529196 | 7.89604 | 10.22881 | 8.021309 | 8.597162 | 8.635856 | 6.552056 | 6.793193 | 5.471509 | 7.01619 | 8.47936 | -0.07276 | 7.777993 | 9.122476 | 7.064902 | 9.052393 | 7.254095 1 | 9.546751 | 9.857386 | 10.00238 | 8.199814 | 7.169902 | 7.412336 | 8.794888 | 12.67521 | 8.040343 | 9.106931 | 9.479213 | 9.956804 | 9.020334 | 7.702115 | 7.234711 | 7.477928 | 7.157273 | 6.376051 | 7.900289 | 1.274 | 7.889418 | 9.015007 | 7.5409 | 8.635828 | 7.74095 1 | 10.6226 | 10.80849 | 10.67023 | 8.470428 | 7.478952 | 7.65858 | 9.528185 | 12.81089 | 8.654433 | 9.445445 | 10.53923 | 10.38178 | 9.894319 | 7.556777 | 7.491307 | 7.129691 | 7.340788 | 6.988923 | 7.537323 | 3.712616 | 8.277083 | 11.14438 | 10.14665 | 9.4297 | 7.53745 1 | 11.97321 | 11.91684 | 10.53252 | 8.50255 | 7.471859 | 9.52329 | 9.185613 | 13.03659 | 9.783362 | 8.3137 | 7.887291 | 9.610128 | 9.835322 | 8.620687 | 7.774626 | 9.353949 | 6.899283 | 6.961764 | 9.522365 | 8.26156 | 8.251942 | 13.32688 | 8.650271 | 9.195168 | 7.669248 1 | 11.46626 | 11.07834 | 9.164665 | 6.123933 | 8.312407 | 8.690699 | 9.213777 | 13.13737 | 9.408367 | 8.295485 | 8.865525 | 10.79397 | 8.466208 | 2.722659 | 7.573284 | 5.738644 | 6.922225 | 4.599674 | 9.508917 | 2.329038 | 8.419192 | 11.49265 | 7.236664 | 9.169882 | 6.747856 1 | 10.16031 | 11.1126 | 10.60683 | 9.321598 | 7.269393 | 8.157207 | 9.235559 | 12.04169 | 8.896558 | 8.602994 | 9.564706 | 8.802763 | 9.026568 | 7.66172 | 8.257554 | 9.634726 | 5.881906 | 7.143787 | 9.49176 | 7.937929 | 8.01554 | 9.267657 | 9.623668 | 9.075549 | 8.357157 1 | 11.43493 | 11.7939 | 10.88148 | 6.806901 | 7.234173 | 8.850052 | 9.917477 | 13.47189 | 10.59475 | 8.177668 | 10.61716 | 10.90553 | 9.514144 | 3.738657 | 8.601109 | 9.218705 | 7.814049 | 6.946184 | 8.930995 | 1.435726 | 8.409201 | 12.88639 | 10.54889 | 9.805679 | 8.603866 1 | 11.62196 | 10.91986 | 8.901938 | 7.049843 | 7.6367 | 8.274672 | 9.409051 | 11.98132 | 7.893459 | 7.998264 | 9.123572 | 9.615147 | 10.68845 | 6.3979 | 7.798816 | 7.764414 | 6.163759 | 5.722353 | 10.33616 | 5.854182 | 8.303106 | 12.04383 | 8.503701 | 10.80629 | 9.52303 1 | 12.73119 | 12.52101 | 10.58393 | 6.507014 | 9.468784 | 10.09755 | 8.852375 | 9.63389 | 10.05262 | 7.599256 | 9.514765 | 7.444078 | 9.34812 | 2.525818 | 8.252972 | 7.600807 | 6.324798 | 5.443009 | 9.491564 | 9.79152 | 10.08803 | 12.82341 | 8.764533 | 10.28777 | 8.986037 1 | 10.62325 | 10.56352 | 9.826261 | 5.938072 | 8.292893 | 8.63277 | 9.409626 | 12.19846 | 8.527761 | 8.791062 | 9.555222 | 10.13242 | 9.56837 | 5.13691 | 8.135203 | 7.349494 | 6.502833 | 2.630983 | 8.112849 | 2.898718 | 8.81345 | 8.298477 | 8.361518 | 9.285156 | 7.187809 1 | 10.00473 | 10.22474 | 9.567542 | 7.272904 | 7.902916 | 8.390888 | 8.372672 | 12.06097 | 8.389211 | 8.675863 | 9.65158 | 9.501591 | 9.169522 | 6.78092 | 7.656615 | 7.436183 | 7.28243 | 5.288898 | 8.260228 | 8.399568 | 8.293409 | 9.536352 | 6.942271 | 9.2085 | 8.302964 1 | 10.01135 | 10.23232 | 9.141671 | 8.157838 | 7.508539 | 7.44291 | 9.801702 | 12.58216 | 8.249223 | 8.33297 | 9.921489 | 10.38172 | 9.49862 | 7.386416 | 8.168696 | 7.358607 | 7.262832 | 5.864763 | 8.463744 | 2.266755 | 8.177492 | 7.687468 | 7.436762 | 9.142888 | 7.855761 1 | 12.34593 | 12.80415 | 10.89818 | 7.106576 | 7.371266 | 9.727402 | 10.04912 | 12.15625 | 9.571361 | 4.25392 | 9.761762 | 9.229502 | 8.906044 | 6.287316 | 8.364796 | 9.777386 | 7.730541 | 5.091298 | 9.66886 | 7.812403 | 8.56071 | 12.89351 | 9.594463 | 9.17965 | 8.144838 1 | 10.99469 | 10.86991 | 10.14061 | 6.232728 | 8.528963 | 9.810955 | 10.68983 | 12.27469 | 10.14235 | 9.208491 | 11.1367 | 10.08164 | 9.4627 | 1.380743 | 8.976373 | 7.450822 | 7.142906 | 5.492703 | 6.50183 | 1.282089 | 8.418109 | 12.0552 | 10.42081 | 9.15984 | 7.239703 1 | 11.13477 | 12.1528 | 11.68953 | 6.18404 | 7.853887 | 8.38649 | 10.04299 | 12.73581 | 11.19507 | 9.066716 | 10.94116 | 9.381344 | 10.63555 | 5.842734 | 8.00335 | 9.705318 | 8.84251 | 6.010639 | 11.84816 | 7.715483 | 8.780065 | 12.29738 | 10.53185 | 9.2085 | 9.877038 1 | 10.28429 | 10.71096 | 9.529646 | 9.295675 | 7.545682 | 6.979031 | 9.20979 | 11.41543 | 8.741471 | 9.0002 | 9.520468 | 8.394489 | 10.30285 | 6.777279 | 7.214004 | 6.860093 | 5.370913 | 7.1651 | 9.842188 | 2.600854 | 7.729501 | 9.203204 | 7.444571 | 9.474985 | 7.441858 1 | 10.71917 | 10.22161 | 11.19139 | 6.104353 | 7.446939 | 8.111593 | 10.0685 | 12.12725 | 8.042373 | 7.657743 | 9.909874 | 11.0118 | 9.346431 | 5.438868 | 8.066157 | 9.577272 | 6.928388 | 5.212221 | 9.264521 | 0.120554 | 8.181727 | 9.795612 | 9.396821 | 9.086635 | 9.396413

yh1028 commented 7 months ago

Hello, this is my dataset

dzhakparov commented 7 months ago

Hi, Unfortunately, I wasn't able to reproduce it. Can you share the following things:

  1. The code that you are trying to run that produces the error;
  2. Your GeneSelectR_env conda environment configuration
  3. Your machine configuration that you are running your code on. Best,