Packages using nonstandard python search paths

[Micket]

After going through and dropping the standard PYTHONPATH environment variables for my EBPYTHONPREFIXES change, I've found:

• [ ] OpenMM-7.7.0-foss-2022a.eb
• [ ] OpenMM-7.7.0-foss-2022a-CUDA-11.7.0.eb
• [ ] OpenMM-8.0.0-foss-2023a-CUDA-12.1.1.eb
• [ ] OpenMM-8.0.0-foss-2022a-CUDA-11.7.0.eb
• [ ] OpenMM-8.0.0-foss-2023a.eb
• [ ] OpenMM-8.0.0-foss-2022a.eb

uses the nonstandard path

'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages/OpenMM-%(version)s-py%(pyshortver)s-linux-%(arch)s.egg'

which is just strange

• [ ] FSL-6.0.5.1-foss-2021a.eb uses 'PYTHONPATH': ['fsl/lib/python%(pyshortver)s/site-packages'] (seems like an easy fix?)
• [ ] CIRIquant-1.1.2-20221201-foss-2021b-Python-2.7.18.eb uses 'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages/CIRIquant' (is the module file even correct by specifying the subdir here?)
• [ ] CRISPResso2-2.1.2-foss-2020b*.eb uses 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages/CRISPResso2'] (and here?)

There is also

• [ ] Graphviz
• [ ] Spark
• [ ] SRA-Toolkit
• [ ] Stata
• [ ] PLUMED
• [ ] PySCF
• [ ] vcflib
• [ ] pyMBE
• [ ] pypmt
• [ ] pycubescd
• [ ] PYTHIA
• [ ] gmsh
• [ ] GIMIC
• [ ] Claire
• [ ] FLANN
• [ ] FIGARO
• [ ] NanoCaller
• [ ] ADIOS
• [ ] ASAP
• [ ] ESIpy
• [ ] KMC
• [ ] SUPPA
• [ ] SISSO++
• [ ] IsoQuant
• [ ] TELEMAC-MASCARET
• [ ] HOOMD-blue
• [ ] MEME
• [ ] manta
• [ ] MBX

which are use something silly like lib or bin or lib/python as their paths. Sigh. So many. Some of these matter more than others.

[boegel]

I guess they way forward for those would be to beat them into submission by making sure they use the default lib/python*/site-packages (for example via postinstallcmds), so $EBPYTHONPREFIXES also works for them (and then eventually forbidding easyconfigs from setting PYTHONPATH directly);