search

ebi-pf-team / interproscan

Genome-scale protein function classification
Apache License 2.0
303 stars 67 forks source link

Large File Space Causing Issues Running InterProScan #318

Closed rghosh670 closed 1 year ago

rghosh670 commented 1 year ago

I'm trying to use InterProScan in standalone mode on a cluster with a large file space (8E). Whenever I try to run the tool, I get the following error:

org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.apache.activemq.xbean.XBeanBrokerService#0' defined in class path resource [spring/jms/master/standalone-master-context.xml]: Invocation of init method failed; nested exception is org.apache.activemq.ConfigurationException: File system space reported by: /hot/user/rghosh/splicing_project/protein_analysis/lib/interproscan-5.61-93.0 was negative, possibly a huge file system, set a sane usage.total to provide some guidance

Is there any way for me to work around this issue? I think the large file space is causing an overflow error.

matthiasblum commented 1 year ago

It looks like it's an issue with the file system indeed. You can try to run InterProScan with Docker, otherwise you will need to request our cluster admin to provide a smaller file system.