Open taolin1 opened 8 years ago
sorry - that workflow is not on the PEcAn VM. Here is what to do:
clone the biocro_regional repository
cd ${HOME}
git clone git@github.com:ebimodeling/biocro_regional
cd into the pecan directory, checkout the biocro-module branch, and build PEcAn
cd ${HOME}/pecan
git pull
git fetch --all
git checkout -b biocro-module2
./scripts/build.sh --dependencies
"/home/dlebauer/dev/biocro_regional/vignettes/illinois_mxg_settings.xml"
"${HOME}/biocro_regional/vignettes/illinois_mxg_settings.xml"
.... proceed, and let me know if this resolves the issue ...
How can I configure PEcAn VM to submit jobs to ROGER?
- create a new user account
git clone git@github.com:pecanproject/pecan
./pecan/scripts/sshkey.sh
- follow instructions (
roger-login.ncsa.illinois.edu
;username
, copy-paste last line in terminal beginning withcat " ....
... to send public key to roger- now this should work ...
Thanks, David! It works.
The sshkey setting looks okay, however, after I reload setting file and run to the following command,
start.model.runs(settings, settings$database$bety$write) # Start ecosystem model runs
It is still using my account instead of Tao's to submit jobs, any steps I missed?
Oh, just figured out I need to change the .ssh/config user name option, it works now.