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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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Error in ciftify_peaktable and ciftify_statclust_report #170

Open kmanoli opened 2 years ago

kmanoli commented 2 years ago

Hello,

I'm trying to get more information about a seed-to-voxel correlation dscalar file, generated with ciftify_seed_corr. I tried ciftify_peaktable and ciftify_statclust_report but got the same error: AttributeError: 'Index' object has no attribute 'get_values'. I used these functions with and without extra options, but the errors persist. I should mention that ciftify_statclust_report does generate a _clust.dlabel.nii, but no csv file. Any help will be greatly appreciated! 

Traceback (most recent call last):
  File "/Users/katerina/opt/anaconda3/bin/ciftify_peaktable", line 8, in <module>
    sys.exit(main())
  File "/Users/katerina/opt/anaconda3/lib/python3.9/site-packages/ciftify/bin/ciftify_statclust_report.py", line 426, in main
    ret = run_ciftify_dlabel_report(arguments, tmpdir)
  File "/Users/katerina/opt/anaconda3/lib/python3.9/site-packages/ciftify/bin/ciftify_statclust_report.py", line 182, in run_ciftify_dlabel_report
    for pd_idx in df.index.get_values():
AttributeError: 'Index' object has no attribute 'get_values'

Pandas version: 1.3.4 Python version: 3.9.7

Best, Katerina

joebathelt commented 2 years ago

Hi Katerina, I had the same issue. I think the reason is that the df.index.get_values() syntax is no longer supported in pandas (see pandas documentation). As a workaround, I created a conda environment with an older version of pandas: 

conda create -n 'ciftify'  
conda activate ciftify  
conda install python=3.7  
conda install pandas=0.24 
pip install -U ciftify