Using seurat for cellrouter trajectory analysis

[fereshtehizadi]

Hi,

I have already my cell clustered by seurat, now I want to use cell router for trajectory analysis? how that would be please? saying cellrouter@sampTab will help but I don't know how to use that for using my seurat clusters here

Thanks a lot for any help

[edroaldo]

Sorry, not sure what it is wrong... You can check predicted targets of a regulator using (please, use this as a workaround while I try to figure out what is happening on your side...): grn.scores$0.1$targets$SOMEGENE

Thanks!

Em qua, 15 de ago de 2018 às 10:26, fereshtehizadi notifications@github.com escreveu:

https://drive.google.com/file/d/1-Izh8XXKlLLLXO1uRxlcwTQnNZZ--PBE/view?usp=sharing http://url

https://drive.google.com/file/d/1V6VeZES88jF8JfFqY3OLXIg5n7VqEFjC/view?usp=sharing http://url

The link of produced images

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[fereshtehizadi]

thank you

> grn.scores$`0.1`$targets$DDB_G0286411
[1] "DDB_G0286411" "DDB_G0273021" "DDB_G0273033" "DDB_G0274041"
> 
>