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edward130603
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BayesSpace
Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
http://edward130603.github.io/BayesSpace
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Error when load data by `readVisium`
#126
hannshu
opened
6 days ago
0
BayesSpace's compatibility with Imaging-based ST
#125
rocketeer1998
opened
1 week ago
0
false bug report. sorry.
#124
berniejmulvey
closed
1 month ago
2
seurat_cluster_DE function
#123
mtrussart
opened
1 month ago
3
Backward-incompatible changes introduced by spaceranger v2
#122
AmelZulji
closed
2 months ago
3
Running BayesSpace in multiple capture areas
#121
Mireiaandueza
opened
3 months ago
2
qTune/spatialCluster do not identify neighbours
#120
drighelli
opened
5 months ago
3
Error in spatialCluster
#119
littlecabiria
opened
5 months ago
1
Clustering on univariate data
#118
boyiguo1
opened
6 months ago
2
AddModuleScore
#117
bugie19
opened
8 months ago
1
Prepare for upcoming Seurat v5 release
#116
saketkc
opened
9 months ago
0
code and Supplementary information are incoherence
#115
usst-hzf
opened
10 months ago
4
How to: Custom SingleCellExperiment Object
#114
eden528
opened
10 months ago
1
How can I divide the original image like the subspots using Spatial Enhance??
#113
oghzzang
opened
11 months ago
0
About the input file of BayesSpace
#112
makabakayu
closed
11 months ago
2
BayesSpace v1.11.3
#111
senbaikang
opened
12 months ago
0
Bayespace reference scRNAseq data
#110
chrkuo
opened
1 year ago
3
enhance gene expression of enhanced clusters taking too long to run
#109
joachimsiaw
opened
1 year ago
2
set the scale value for featureplot
#108
kohei-onishi-0219
opened
1 year ago
1
spatialEnhance in Joint clustering Analysis
#107
alberto-valdeolivas
closed
1 year ago
2
BayesSpace v1.11.0
#106
senbaikang
closed
1 year ago
7
small change in outputs of spaceranger v2
#105
briglo
opened
1 year ago
2
Ideal Cluster Number
#104
meaksu
opened
1 year ago
1
SpatialCluster() using SCTransform array
#103
jeji0209
closed
10 months ago
4
Create a new cluster in BayesSpace enhanced cells based on barcode names
#102
jessielam415
closed
1 year ago
1
Spatial Cluster Size Error
#101
meaksu
closed
1 year ago
1
imagerow and imagecol coordinates are not spread out equidistantly
#100
killerz99
closed
1 year ago
7
Overlay BayesSpace result onto tissue image
#99
JPingLin
closed
1 year ago
2
Subsetting cells based on expression-level conditions
#98
jessielam415
closed
1 year ago
4
Getting gene expression proportion
#97
rue1996
opened
1 year ago
1
clusterPlot error
#96
meaksu
closed
1 year ago
7
plot_expression per sample
#95
parkjooyoung99
closed
1 year ago
1
Individual based clustering of samples to cluster numbers
#94
archanabhardwaj
opened
1 year ago
1
spatialCluster() returns error "non-numeric argument to binary operator"
#93
ivykos
closed
1 year ago
1
readVisium() returns an "invalid character indexing" error
#92
ivykos
closed
1 year ago
2
Setting up the scale bar
#91
rue1996
opened
1 year ago
1
import seurat object
#90
wang0430
opened
1 year ago
3
Batch Effect Correction with harmony Error in UseMethod
#89
dgorski147
opened
1 year ago
4
Image coordinate transfer from SeuratObject
#88
artemisiat
opened
1 year ago
1
Error when running the spatialEnhance function
#87
madhavitippani
opened
1 year ago
1
BayesSpace after spotclean
#86
JihyunKiminGithub
opened
1 year ago
1
BayesSpace on high-res spatial omics data
#85
jleechung
closed
1 year ago
4
Error: subscript contains invalid names
#84
qinxiaoy
closed
2 years ago
0
SingleCellExperiment objects constructed manually from a counts matrix and tables of row and column data
#83
DevinDZ
closed
2 years ago
0
There is a problem with getRDS().
#82
yzf072
opened
2 years ago
10
Access to the existing example data
#81
zqsha
opened
2 years ago
2
Missing clusters when cluster at k = 28
#80
abspangler13
opened
2 years ago
2
Is BayesSpace suitable for spatial data after cell segmentation
#79
xyn0813
opened
2 years ago
1
IDC/OC IF image data
#78
jbreynier
closed
2 years ago
3
Cluster structure lost on enhancement
#77
briglo
closed
2 years ago
6
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