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epi2me-labs
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wf-metagenomics
Metagenomic classification of long-read sequencing data
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Error when a trying --amr
#121
msubirana
opened
3 weeks ago
1
AMR databases
#120
rs-norman
closed
1 month ago
1
minimap2 custom database
#119
Anenovaes
closed
4 weeks ago
3
Is it possible to access an index from a remote server using EPI2ME?
#118
timregan
closed
3 months ago
1
Customize the workflow
#117
Harper19
closed
3 months ago
1
Error running real time pipeline
#116
sarah-buddle
closed
1 month ago
10
Adding UNITE ITS database to the pre-built options
#115
jdiazsupsi
closed
4 months ago
1
wf-metagenomics (run error)
#114
YoungMunLEE
closed
2 months ago
4
ERROR ~ Validation of pipeline parameters failed! (fastq/bam)
#113
LucyNanopore
closed
2 months ago
1
ERROR ~ Validation of pipeline parameters failed! (fastq/bam)
#112
LucyNanopore
closed
4 months ago
3
There is no progression on the analysis/process
#111
CurryMuthu
closed
4 months ago
4
Duration of the Analysis using Metagenomic - Kraken2 (Standard 8)
#110
CurryMuthu
closed
4 months ago
1
Turn off fastcat?
#109
katievigil
closed
5 months ago
3
error exit status (255)
#108
katievigil
closed
5 months ago
5
Error: "Please make sure that the ref2taxid matches the reference."
#107
plycrsk
closed
5 months ago
1
min_percent_identity and min_ref_coverage not available in v2.10.0?
#106
plycrsk
closed
5 months ago
0
Combining PlusPFP and EuPathDB46 databases and adding custom sequences
#105
msubirana
closed
4 months ago
1
Fastq file format
#104
RarltyOne
closed
1 month ago
3
I have problem with fastq format.
#103
RarltyOne
closed
5 months ago
1
Process `fastcat ` terminated with an error exit status (125)
#102
aggath
closed
4 months ago
8
Ran out of Memory Even When Using Memory Mapping
#101
Pompidor
closed
5 months ago
3
A table matching sequences with the taxonomic assignment
#100
irc47
closed
4 months ago
8
AMR
#99
SilSanGon
closed
2 months ago
4
invalid Kingdom taxonomic_rank option
#98
RunpengLuo
closed
2 months ago
3
Angling lables on total read count bar chart
#97
irc47
closed
5 months ago
4
License for epi2me workflow repos
#96
abhimalatpure
closed
6 months ago
1
Classification of ARGs
#95
lukebsnell
closed
5 months ago
2
Error running wf with different Kraken database
#94
mishkb
closed
5 months ago
6
Error - kraken_pipeline:makeReport - Exit status 137
#93
RunpengLuo
closed
6 months ago
2
Ran out of Memory Even When Using Memory Mapping
#92
peradastra
closed
6 months ago
3
no such variable : ref2taxid_file
#91
Aline-Git
closed
5 months ago
6
Proxy setting
#90
anditg
closed
5 months ago
4
Adding custom seqs to existing databases
#89
annabel-dekker
closed
4 months ago
2
Color Selection for Bar Charts
#88
irc47
closed
2 months ago
3
Trims off adapter sequences
#87
aimirza
closed
2 months ago
2
Is it possible to use EuPathDB46 as a db?
#86
msubirana
closed
7 months ago
6
HTML Report - Taxonomy graph does not display percentages of each species
#85
lhuang3s
closed
6 months ago
3
Input file structure and file type
#84
joyleng
closed
7 months ago
13
Error message about Matplotlib and anytree
#83
weishwu
closed
1 month ago
6
Error: Could not load abundance_tables due to missing module anytree
#82
weishwu
closed
9 months ago
1
minimap error only when sample sheet is used
#81
irc47
closed
5 months ago
7
Minimap2 custom database
#80
EsbergA
closed
5 months ago
12
reference table
#79
HannahBenisty
closed
8 months ago
1
Process requirement exceeds available memory
#78
joyleng
closed
8 months ago
9
`kraken_pipeline:makeReport` fails when using --amr option - [ Plotter ] Cannot correct axis labels in complicated scenarios.
#77
eparisis
closed
9 months ago
14
non-assigned reads
#76
HannahBenisty
closed
10 months ago
8
taxonomy in the report
#75
HannahBenisty
closed
10 months ago
5
html report - read summary
#74
HannahBenisty
closed
1 year ago
12
Please delete!
#73
seanmsjkim
closed
1 year ago
0
Trouble running a custom Kraken2 DB
#72
nataliering
closed
11 months ago
7
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