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epi2me-labs / wf-somatic-variation

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Error when emitting versions and parameters for main.nf #22

Closed TBradley27 closed 4 weeks ago

TBradley27 commented 4 weeks ago

Operating System

Other Linux (please specify below)

Other Linux

Rocky linux v8.6

Workflow Version

v1.2.1

Workflow Execution

Command line (Cluster)

Other workflow execution

No response

EPI2ME Version

No response

CLI command run

nextflow run epi2me-labs/wf-somatic-variation

Workflow Execution - CLI Execution Profile

None

What happened?

The pipeline failed before returning version and parameter information

Relevant log output

ERROR ~ Script compilation error
- file : /Users/bradle02/.nextflow/assets/epi2me-labs/wf-somatic-variation/main.nf
- cause: Invalid output definition @ line 376, column 5.
       output(versions.concat(parameters).concat(report.out))

Application activity log entry

No response

Were you able to successfully run the latest version of the workflow with the demo data?

other (please describe below)

Other demo data information

No response

SamStudio8 commented 4 weeks ago

@TBradley27 Our workflows are currently incompatible with Nextflow 24.04, we are patching workflows to resolve this. While you're waiting you can run the workflow with a fixed version of Nextflow like so: NXF_VER='23.10.2' nextflow run ...

TBradley27 commented 4 weeks ago

Great, thank you very much!