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epiforecasts
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EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
https://epiforecasts.io/EpiNow2/dev/
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install rstan from CRAN explicitly
#775
sbfnk
closed
2 months ago
0
Handle messaging around model treatment of missingness
#774
jamesmbaazam
closed
1 month ago
11
Test a dummy changes for actions
#773
seabbs
closed
2 months ago
1
Add vignette on modelling temporally aggregated data (i.e., `obs_opts(na = "accumulate")` )
#772
jamesmbaazam
opened
2 months ago
8
Add message explaining new behaviour when `obs_opts(na = "missing")`
#771
jamesmbaazam
closed
1 month ago
1
update-citation action is missing libcurl4-openssl-dev
#770
sbfnk
closed
1 month ago
1
Update actions
#769
seabbs
closed
2 months ago
27
Growth rate estimators
#768
adrian-lison
opened
2 months ago
0
Weekly random walk estimator no longer working as expected
#767
martinamcm
closed
2 months ago
11
Bump peter-evans/create-pull-request from 6 to 7
#766
dependabot[bot]
closed
2 months ago
0
Locally stationary GPs
#765
seabbs
opened
2 months ago
1
Bump JamesIves/github-pages-deploy-action from 4.6.3 to 4.6.4
#764
dependabot[bot]
closed
2 months ago
0
Update `CITATION.cff`
#763
github-actions[bot]
closed
3 months ago
0
Replace base R message/warning/stop with `{cli}`
#762
jamesmbaazam
closed
3 months ago
2
Document/surface what settings are applied when `rt = NULL`.
#761
jamesmbaazam
closed
2 months ago
2
Optimised Matern kernels
#760
seabbs
closed
1 month ago
0
ARMA spectral density
#759
seabbs
opened
3 months ago
1
Update README
#758
github-actions[bot]
closed
3 months ago
0
Vectorise GPs
#757
seabbs
closed
3 months ago
5
Initialise models with approximate algorithms
#756
jamesmbaazam
opened
3 months ago
0
Update README
#755
github-actions[bot]
closed
3 months ago
0
Update README
#754
github-actions[bot]
closed
3 months ago
0
README updates: suggest `cmdstanr` + nowcasting course resource
#753
jamesmbaazam
closed
3 months ago
0
Check tail of nonparametric PMFs
#752
jamesmbaazam
closed
3 months ago
0
Remove fixed lower bound samples in `dist_fit()`
#751
jamesmbaazam
closed
2 months ago
3
Skip checking parameters of nonparametric distributions
#750
jamesmbaazam
closed
3 months ago
0
NonParametric distributions fail `check_stan_delays()` run
#749
jamesmbaazam
closed
3 months ago
0
Use multiplier to make rw non-centred
#748
seabbs
closed
3 months ago
3
Switching to broadcasting random walk
#747
seabbs
closed
3 months ago
6
Use broadcasting vs loop in day of week
#746
seabbs
closed
3 months ago
4
Optimise convolutions
#745
seabbs
closed
3 months ago
10
Add render workflows
#744
seabbs
closed
3 months ago
0
Clean up spurious pngs
#743
seabbs
closed
3 months ago
0
Issue 757: Vectorise GP stan code
#742
seabbs
closed
3 months ago
18
Additional GP kernels
#741
sbfnk
closed
3 months ago
4
Document all stan code
#740
jamesmbaazam
opened
3 months ago
1
Add a warning when the length of delays are longer than the supplied data
#739
seabbs
opened
3 months ago
4
Add a warning when PMFs are very sparse in the tails
#738
seabbs
closed
3 months ago
0
Issue 735: Fix truncation slicing when t < truncation
#736
seabbs
closed
3 months ago
13
Truncation adjustment does not work as expected if truncation vector is too long
#735
kgostic
closed
3 months ago
5
tolerance -> cdf_cutoff
#734
sbfnk
closed
2 months ago
1
fix_dist -> fix_parameters
#733
sbfnk
closed
2 months ago
3
Add actions to precompile long running vignettes
#732
jamesmbaazam
closed
3 months ago
5
add `merge_group` to required checks
#731
sbfnk
closed
4 months ago
0
Change Getting started documentation to point users to faster models
#730
jamesmbaazam
opened
4 months ago
5
Make argument defaults explicit where possible
#729
Bisaloo
closed
4 months ago
0
`pathfinder` fails for large case reports
#728
jamesmbaazam
closed
1 month ago
5
Overflow issues with `neg_binomial_2_rng` in variational bayes method
#727
jamesmbaazam
closed
3 months ago
3
Considerations for the responsible use of GitHub Actions
#726
jamesmbaazam
closed
3 months ago
10
`bootstrapped_dist_fit` example produces warnings about too many samples
#725
sbfnk
closed
2 months ago
0
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