module upgrade - Githubissues

epigen / MrBiomics

MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale

MIT License

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module upgrade #22

Closed sreichl closed 2 months ago

sreichl commented 2 months ago

for each module

[x] #9
[x] #10
[x] #13
[x] #19
[x] #6
[x] check other open issues

[x] create a new major release

vX.0.0 - Snakemake 8 compatible
**Breaking change**: Requires Snakemake >= v8.20.1

Modules

[x] Unsupervised Analysis
[x] Split, Filter, Normalize and Integrate Sequencing Data
[x] Differential Analysis Using limma
[x] Enrichment Analysis
[x] Genome Track Visualization
[x] scRNA-seq Processing using Seurat
[x] Differential Analysis using Seurat
[x] Perturbation Analysis using Mixscape from Seurat
[x] ATAC-seq Processing