Module-specific default profile not being used

[fwzhao]

Snakemake8 (v8.20.3) atacseq_pipeline (v2.0.0) - global defaults: partition shortq cemm.slurm.cm (v.3.0.0) - global defaults: partition tinyq

For project using multiple modules, module-specific default profile does not seem to be used. Behavior: When sbatch snakemake conductor.sh --> the global default are used (partition: tinyq) for job rather than the module specific defaults (partition: shortq) When the respective lines for global defaults are commented out, no partition is assigned, leading to -

WorkflowError: SLURM job submission failed. The error message was sbatch: error: Batch job submission failed: No partition specified or system default partition

[sreichl]

asked here: https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/106#issuecomment-2360816326 in issue: https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/106