Install Homer should be a rule/job

epigen / atacseq_pipeline

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

https://epigen.github.io/atacseq_pipeline/

MIT License

47 stars 2 forks source link

Closed sreichl closed 1 year ago

sreichl commented 1 year ago

without relative path, otherwise .sh script can not be found when used as a module
- same solution as with LOLA resource in enrichment_analysis https://github.com/epigen/enrichment_analysis/blob/efa96bf076bac8584b31b235feb571d5aef1e741/workflow/rules/resources.smk#L56C3-L56C3
- script, rule and env file exist
- http://homer.ucsd.edu/homer/