revamp MultiQC report

[sreichl]

• [x] get it to run without atacseq_module
• [x] transfer software/package versions to env.yaml
• [x] drill into atacseq_report.py if/what necessary...
• [x] Compare current MultiQC results & HUB with previous
  • -> HUB generation required -> symlinks and some special txt files
  • -> Extraction/symlinking of stats required inside or report/ dir
• [x] try Copilot Chat for help
• [x] implement HUB generation as rule in multiqc.smk
• [x] implement report/ symlinking as rule in multiqc.smk
• [x] address: throws an error if the field flowcell is not present in sample_annotation.csv
• [x] debug remaining atacseq.py code
  • [x] fastp error messages
  • [x] file name is not correct -> snakemake can't find it
  • [x] check if some of the commented configs are directly used by multiqc (and not the atacseq report module)
  • [x] make every annot column an exploratory column in report, no. conifg, but also used for trackhub
  • [x] check why multiqc folder is called multiqc_report_data/ instead of multiqc_data/ per docs
• [x] compare statistics of samples
• [x] go through report and check hyperlinks: same?, correct?, working?
• [x] go through atacseq report module and update everything e.g., metadata etc.
• [x] try to put remaining configs into bash command, so that config file dependency is gone
• [x] change back the environment specs multiqc.yaml, push the changes, and test one more time