consider including TOBIAS - Githubissues

epigen / atacseq_pipeline

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

https://epigen.github.io/atacseq_pipeline/

MIT License

47 stars 2 forks source link

consider including TOBIAS #30

Closed sreichl closed 11 months ago

sreichl commented 1 year ago

paper: https://www.nature.com/articles/s41467-020-18035-1 GitHub: https://github.com/loosolab/TOBIAS Snakemake Workflow: https://github.com/loosolab/TOBIAS_snakemake conda: https://anaconda.org/bioconda/tobias

[x] find out what are the input options (e.g., raw/aligned)
[x] find out concrete and generalizable outputs
[x] decide to implement or not

sreichl commented 11 months ago

out of scope.