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epigen
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enrichment_analysis
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
https://epigen.github.io/enrichment_analysis/
MIT License
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release v1.0.0
#23
sreichl
closed
1 month ago
0
fix group summary dot plot
#22
sreichl
closed
1 month ago
0
user-defined database support for GREAT
#21
sreichl
closed
1 month ago
0
GREAT issues
#20
sreichl
closed
1 month ago
1
investigate preranked GSEApy behaviour for +/-Inf scores
#19
sreichl
closed
1 month ago
1
Aggregate/visualize not working (because of empty output?)
#18
Rubbert
closed
1 month ago
1
Enrichment analysis result visualisation using volcano plots (significance by effect-size)
#17
sreichl
closed
1 month ago
1
add GSVA (supported by latest GSEApy)
#16
sreichl
closed
1 month ago
1
include decoupleR
#15
sreichl
closed
1 month ago
1
include clusterProfiler ecosystem
#14
sreichl
closed
1 month ago
1
enhanced visualization considering hierarchical nature of enrichment terms
#13
sreichl
closed
1 month ago
1
PPI analysis using STRING R package
#12
sreichl
closed
1 month ago
1
TFBS/motif enrichment analysis
#11
sreichl
closed
1 month ago
5
user-defined database support for LOLA
#10
sreichl
closed
1 month ago
0
include g:profiler from Elixier
#9
sreichl
closed
1 month ago
1
Custom sample order in summary plots
#8
dariarom94
closed
1 month ago
1
raise KeyError(key) from err KeyError: 'qValue' Error in rule aggregate:
#7
sandragold
closed
7 months ago
6
Error in rule gene_ORA_GSEApy: jobid: 31, raise ValueError("No objects to concatenate")
#6
sandragold
closed
1 year ago
2
Create LICENSE
#5
sreichl
closed
1 year ago
0
The results are not generating
#4
sandragold
closed
1 year ago
3
complete documentation
#3
sreichl
closed
1 year ago
0
User provided databases
#2
sreichl
closed
1 year ago
0
update and document all packages to latest version
#1
sreichl
closed
1 month ago
1