update to sctransform to use vst.flavor="v2"

epigen / scrnaseq_processing_seurat

A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

https://epigen.github.io/scrnaseq_processing_seurat/

MIT License

15 stars 1 forks source link

update to sctransform to use vst.flavor="v2" #5

Closed sreichl closed 9 months ago

sreichl commented 2 years ago

how to install https://github.com/satijalab/sctransform https://anaconda.org/conda-forge/r-sctransform

how to use https://satijalab.org/seurat/archive/v4.3/sctransform_v2_vignette