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eqcorrscan / EQcorrscan

Earthquake detection and analysis in Python.
https://eqcorrscan.readthedocs.io/en/latest/
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Running test_eqcorrscan.py #366

Closed ymaalouf closed 4 years ago

ymaalouf commented 4 years ago

When I am running test_eqcorrscan.py I am getting the following error (attached) - Would appreciate your help.

Thank you

screenshot

calum-chamberlain commented 4 years ago

The tests are not designed to be run in jupyter, please try in a normal terminal.

CJ Chamberlain, out of office

From: ymaalouf notifications@github.com Sent: Monday, December 16, 2019 7:24:31 AM To: eqcorrscan/EQcorrscan EQcorrscan@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [eqcorrscan/EQcorrscan] Running test_eqcorrscan.py (#366)

When I am running test_eqcorrscan.py I am getting the following error (attached) - Would appreciate your help.

Thank you

[screenshot]https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuser-images.githubusercontent.com%2F58947147%2F70919081-7c058400-2020-11ea-85a4-fa79f0d6d14d.png&data=02%7C01%7Ccalum.chamberlain%40vuw.ac.nz%7C6d9fc47f9fa5490c51f408d7823c0dde%7Ccfe63e236951427e8683bb84dcf1d20c%7C0%7C0%7C637121066808889810&sdata=p9z6%2BP0yJEIKeiIcURiZJrtG0TgffcDwC5cXWYfSjII%3D&reserved=0

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ymaalouf commented 4 years ago

I am trying now in cmd. I am still getting errors. The first one is: UserWarning: h5py is running against HDF5 1.10.2 when it was built against 1.10.3, this may cause problems... Any idea what might be happening? When I run it from python.exe it is just crashing in the first 5 minutes. I have python 3.6 Attached screenshots: image

image

calum-chamberlain commented 4 years ago

When you file a bug report like this a form should appear asking you for salient information, like OS, Python version, Eqcorrscan version, how you installed it... did this not happen? Can you provide these details.

The output you are sending doesn't help me find out what is wrong. Can you dump the full output to a text file and attach it to this issue please.

CJ Chamberlain, out of office

From: ymaalouf notifications@github.com Sent: Monday, December 16, 2019 1:11:15 PM To: eqcorrscan/EQcorrscan EQcorrscan@noreply.github.com Cc: Calum Chamberlain calum.chamberlain@vuw.ac.nz; Comment comment@noreply.github.com Subject: Re: [eqcorrscan/EQcorrscan] Running test_eqcorrscan.py (#366)

I am trying now in cmd. I am still getting errors. The first one is: UserWarning: h5py is running against HDF5 1.10.2 when it was built against 1.10.3, this may cause problems... Any idea what might be happening? When I run it from python.exe it is just crashing in the first 5 minutes. I have python 3.6 I have attached a screenshot [image]https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fuser-images.githubusercontent.com%2F58947147%2F70943360-f3530c00-2050-11ea-811a-d896e87755e9.png&data=02%7C01%7Ccalum.chamberlain%40vuw.ac.nz%7Cecc81675a6ce4e53c0f208d7826c7e1b%7Ccfe63e236951427e8683bb84dcf1d20c%7C0%7C0%7C637121274807466358&sdata=aa6xjzhtrKfFH8lVdYL3fH0m6b3lj6joCoTU0nZyECU%3D&reserved=0

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ymaalouf commented 4 years ago

No it opened the thread and did not ask about any information. OS: Windows 10 Python version: Python 3.6.5 Eqcorrscan_Log.txt

Eqcorrscan: EQcorrscan-0.4.0-py3.6.egg-info I was able to get rid of the h5py error. Attached is the whole output text file. thanks

calum-chamberlain commented 4 years ago

Looks okay, the two gained tests appear to be nothing to worry about. The first is a small difference in correlation sum, but the correlations themselves test well.

What did you do to fix the hdf5 warning, and how did you install eqcorrscan?

I will add a template for general issues like this to mirror the bug issue template. Thanks.

ymaalouf commented 4 years ago

you run this to avoid the hdf5 problem: conda install -c anaconda keras I actually followed the recommendation on the website; and upgraded whatever needed to be upgraded. Thanks

On Tue, Dec 17, 2019 at 4:49 PM Calum Chamberlain notifications@github.com wrote:

Looks okay, the two gained tests appear to be nothing to worry about. The first is a small difference in correlation sum, but the correlations themselves test well.

What did you do to fix the hdf5 warning, and how did you install eqcorrscan?

I will add a template for general issues like this to mirror the bug issue template. Thanks.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/eqcorrscan/EQcorrscan/issues/366?email_source=notifications&email_token=AOBXMS2ZN76RYCRU2MWT623QZDYHDA5CNFSM4J3LS6J2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEHC2EUQ#issuecomment-566600274, or unsubscribe https://github.com/notifications/unsubscribe-auth/AOBXMS4WLLPCZKHDVFQNJB3QZDYHDANCNFSM4J3LS6JQ .

-- Yara Maalouf

calum-chamberlain commented 4 years ago

That is strange to need to install keras...

It sounds like the tests are running (nearly) as expected now, so I'm going to close this.