Closed blizard-wizard closed 1 year ago
Hi @blizard-wizard,
This is beyond the scope of sra-explorer sorry, it really is only for fetching the metadata. Anything downstream of that such as downloading and data integrity is the realm of the SRA / ENA directly.
The ENA docs mention that "most directories" have checksum files (link) so you could try that for checking md5sums.
Good luck!
Phil
I used cURL to download some fastqs from SRA (
SRP252588
). 8 files in the study and I want the last 4. Grabbed the bash scripts generated by SRA explorer and setup a loop to download the list of files in the background. I've done this many times before with great success. Anyway... All 4 files appear to have downloaded correctly, but the last one (SRR11296682
) only shows as 22 bytes. When I download the same file through Chrome I get a394mb
file.Any ideas? Is there a way to verify the fastq integrity after download?
I ran cURL in verbose mode to troubleshoot, but everything seems OK. See output below (format might be screwed up).