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faircloth-lab / phyluce

software for UCE (and general) phylogenomics
http://phyluce.readthedocs.org/
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mapping workflow error #248

Open mprebus opened 3 years ago

mprebus commented 3 years ago

Hello Brant, When attempting to run the mapping workflow with v1.7.1, I get the following error:

Traceback (most recent call last): File "/home/mprebus/.conda/envs/phyluce-1.7.1/bin/phyluce_workflow", line 19, in from phyluce.helpers import FullPaths, CreateDir, is_dir, is_file File "/home/mprebus/.conda/envs/phyluce-1.7.1/lib/python3.6/site-packages/phyluce/helpers.py", line 20, in from rich import prompt File "/home/mprebus/.conda/envs/phyluce-1.7.1/lib/python3.6/site-packages/rich/prompt.py", line 4, in from .console import Console File "/home/mprebus/.conda/envs/phyluce-1.7.1/lib/python3.6/site-packages/rich/console.py", line 9, in from dataclasses import dataclass, field, replace ModuleNotFoundError: No module named 'dataclasses'

I noticed that 'dataclasses' is part of the Python 3.7 release, but v1.7.1 uses 3.6. Is this the issue?

brantfaircloth commented 3 years ago

Technically, this should not be an issue if installed as suggested. But it’s possible something slipped through the cracks. You could activate the conda environment for phyluce, and then try:

pip install dataclasses

and see if that works.