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fairgenomes / fairgenomes-semantic-model

FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
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Implement ontology alternatives i.e. mappings in the schema #108

Closed joerivandervelde closed 3 years ago

joerivandervelde commented 3 years ago

Allow alternative ontologies to be defined that are essentially mappings to other models. Perhaps use SKOS nomenclature to indicate the relation? https://www.w3.org/TR/2008/WD-skos-reference-20080829/skos.html

example:

       - name: Identifier
            description: A unique proper name or character sequence that identifies this particular study.
            ontology: OMIABIS:0000006 [http://purl.obolibrary.org/obo/OMIABIS_0000006]
            exactMatch: SIO:000729 [http://semanticscience.org/resource/SIO_000729]
            values: UniqueID
joerivandervelde commented 3 years ago

Useful? https://github.com/mapping-commons/SSSOM

joerivandervelde commented 3 years ago

Implemented this capability