fairtracks fairtracks_standard issues

fairtracks / fairtracks_standard

FAIRtracks is a JSON Schema defining a minimal standard for genomic track metadata.

https://fairtracks.net

Creative Commons Attribution 4.0 International

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issues

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Limit track.file_format to 'Format' ancestor in EDAM

#77 sveinugu opened 2 years ago
0
Switch to Human Phenotype Ontology

#76 sveinugu opened 3 years ago
0
Bump y18n from 4.0.0 to 4.0.1

#75 dependabot[bot] opened 3 years ago
0
Augmentation of example JSON plus misc augmentation-related improvements and cleanup

#74 sveinugu closed 4 years ago
0
Add `sample`->`sample_type`->`details` field?

#73 sveinugu closed 4 years ago
0
Add `sample`->`sample_type`->`cell_lineage`?

#72 sveinugu closed 4 years ago
1
Add shortcuts to central properties to the top-level JSON schema

#71 sveinugu opened 4 years ago
0
Automate release process for new versions of FAIRtracks

#70 sveinugu opened 4 years ago
0
Release v1.0.2

#69 sveinugu closed 4 years ago
0
Update github checks code to correspond with validator changes

#68 sveinugu opened 4 years ago
0
Reopen: Improved version handling. Updated documentation and dependaencies. Releases do not need dedicated a branch anymore

#67 sveinugu closed 4 years ago
0
Debugging checks

#66 sveinugu closed 4 years ago
0
Improved version handling. Updated documentation and dependencies. Releases do not need dedicated a branch anymore

#65 sveinugu closed 4 years ago
1
Misc FAIRtracks bugs/issues

#64 sveinugu opened 4 years ago
1
Publication (PMID) to list of publications (DOI)

#63 sveinugu opened 4 years ago
0
Enforce conditional validation of augmented data

#62 dtitov closed 4 years ago
1
Implement CI pipeline

#61 dtitov closed 4 years ago
2
Change from unique/foreignProperty to unique/primary_key?

#60 sveinugu opened 4 years ago
0
Update local_id documentation: all should refer to correct investigation/hub. Add "unique within document"

#59 sveinugu closed 4 years ago
1
Various documentation changes

#58 sveinugu opened 4 years ago
1
Add flag for augmented metadata and related validation logic

#57 sveinugu closed 4 years ago
4
Generate CI report after a tag is added to the repository

#56 jmfernandez closed 4 years ago
0
Reevaluate versioning and release scheme for FAIRtracks

#55 sveinugu closed 4 years ago
2
Consider updating documentation code and other dependencies

#54 sveinugu closed 4 years ago
0
Validate augmented BLUEPRINT data

#53 sveinugu opened 4 years ago
1
Release FAIRtracks v1.1 with BLUEPRINT data

#52 sveinugu opened 4 years ago
1
Validate minimal BLUEPRINT v1.1 data

#51 sveinugu opened 4 years ago
0
Update Track Hub Registry with BLUEPRINT v1.1 (once fully released)

#50 sveinugu opened 4 years ago
1
Support for multiple track_collections

#49 sveinugu opened 4 years ago
3
New model, and identifier solution for doc_info

#48 sveinugu opened 4 years ago
1
Update BLUEPRINT data to FAIRtracks 1.1

#47 sveinugu opened 4 years ago
0
Support data usage license information, according to FAIR principle R1.1

#46 sveinugu opened 4 years ago
6
Publish FAIRtracks version 1.1 in v1/1.1 (but don't release)

#45 dtitov opened 4 years ago
1
Redundant contact info?

#44 dzerbino opened 4 years ago
2
Refine type_of_condensed_data based upon full list of BLUEPRINT data types

#43 sveinugu opened 4 years ago
0
Reopen: Added type_of_condensed_data and geometric_track_type properties

#42 sveinugu closed 4 years ago
0
Reopen: Added support for species, and improved genome assembly annotation

#41 sveinugu closed 4 years ago
0
Reopen: Implemented JSON Schema versioning

#40 sveinugu closed 4 years ago
1
Miscellaneous small fixes

#39 sveinugu closed 4 years ago
0
Create make target to create new releases?

#38 sveinugu closed 4 years ago
6
Added 'ontologyTermId'

#37 sveinugu closed 4 years ago
1
Add reference between term_id and term_label pairs

#36 sveinugu closed 4 years ago
1
Implemented ontology versioning. Changed from EFO to Uberon for organism_part and to Cell Ontology for cell_type

#35 sveinugu closed 4 years ago
1
Implemented JSON Schema versioning

#34 sveinugu closed 4 years ago
1
Added support for species, and improved genome assembly annotation

#33 sveinugu closed 4 years ago
1
Extract "Contact" as a separate subschema

#32 sveinugu closed 5 years ago
0
Added type_of_condensed_data and geometric_track_type properties.

#31 sveinugu closed 4 years ago
0
Small documentation fixes as pull requests to https://github.com/adobe/jsonschema2md

#30 sveinugu opened 5 years ago
0
Refactor of experiment->target

#29 sveinugu closed 5 years ago
1
Test issue 2

#28 sveinugu closed 5 years ago
1