famuvie breedR issues - Githubissues

famuvie / breedR

Statistical methods for forest genetic resources analysts

http://famuvie.github.io/breedR/

GNU General Public License v3.0

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issues

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BreedR won't install

#115 draperry closed 8 months ago
1
Estimate the competition breeding values with a genomic relationship matrix.

#114 mtiret closed 1 year ago
2
Error for heritability calculation using too small variances

#113 efukatsu opened 1 year ago
1
More robust and smarter parsing of arguments of special components.

#112 famuvie opened 2 years ago
0
Extend `competition` to the case without coordinates

#111 timflutre opened 2 years ago
3
Specify initial variance (var.ini) with "ai" method

#110 veroniquejorge closed 2 years ago
3
Genomic prediction issues

#109 GregorDall closed 2 years ago
6
Test-day model with Legendre polynomials

#108 amizeranschi closed 3 years ago
3
Spatial analysis with breedR

#107 Shuyi1991 closed 3 years ago
3
Release breedR for R v4.0

#106 enotivol closed 4 years ago
10
GBLUP with BreedR example from workshop in Poland

#105 GregorDall closed 4 years ago
3
could perform prediction based on run's results for breedR?

#104 yzhlinscau closed 4 years ago
1
Error in system2

#103 mateusz1981 opened 4 years ago
1
remove dependency on INLA

#102 famuvie opened 5 years ago
0
parse large covariance matrices from REML log

#101 famuvie closed 5 years ago
2
save breedR model and reml log in temporary dir for recovery

#100 famuvie closed 5 years ago
2
could get anova() for fixed factors?

#99 yzhlinscau closed 5 years ago
1
Is it convinient to add one new funciton to calculate standard error for heritability or correlation?

#98 yzhlinscau closed 5 years ago
2
could add a term for genomic relationship inverse matrix?

#97 yzhlinscau closed 5 years ago
1
missing pedigree information and missing phenotypes

#96 treebreeder closed 6 years ago
2
breedR guide on the interaction between Genotype and Environment

#95 famuvie opened 6 years ago
0
Genotype x Environment

#94 treebreeder closed 6 years ago
8
Using character variables in a model

#93 eityeity opened 6 years ago
2
compatibility with parallel::mclapply()

#92 famuvie opened 6 years ago
1
mention the existence of the rgs3 R package

#91 timflutre closed 6 years ago
3
parallelization based on forking

#90 famuvie closed 6 years ago
2
multivariate analyses

#89 leosanrod closed 6 years ago
3
use names in ranef() for generic

#88 timflutre closed 6 years ago
0
make ranef() return cond. mode of generic random variables with their names

#87 timflutre closed 6 years ago
15
formula parser breaks with very long trait names

#86 famuvie closed 7 years ago
1
incorrect labelling of variance components in summary() for 3+ trait models fitted with AI-REML

#85 famuvie closed 7 years ago
1
submit to CRAN

#84 famuvie opened 7 years ago
0
pass CRAN checks

#83 famuvie opened 7 years ago
0
independent pf90 package

#82 famuvie opened 7 years ago
2
Error in dimnames(reml$invAI) when running multiple-traits with AI

#81 leosanrod closed 7 years ago
6
initial covariance set to 0 breaks result-parsing

#80 famuvie closed 7 years ago
0
More informative error msgs: initial variance misspecification

#79 famuvie closed 7 years ago
0
bug in function parser when results are NaN

#78 famuvie opened 7 years ago
1
add interface for specifying weights

#77 famuvie closed 7 years ago
0
Different results with different classes of the 'id' variable

#76 nalnahhas opened 7 years ago
4
plot of spatial effect fails if a predefined object is used for the spatial component in the model

#75 famuvie opened 7 years ago
0
Reduce dependencies

#74 famuvie opened 7 years ago
1
Alternative functions for default number of splines knots

#73 famuvie opened 8 years ago
0
simulator: center random effects

#72 famuvie opened 8 years ago
1
function for diagnosing competition

#71 famuvie opened 8 years ago
0
CI and hypothesis testing section in guide on heritability

#70 famuvie opened 8 years ago
0
More robust and modular parse_results()

#69 famuvie opened 8 years ago
0
More robust function for computing the default formula for heritability

#68 famuvie closed 8 years ago
1
Formula for heritability computed wrongly in competition models with method = 'ai'

#67 famuvie closed 8 years ago
1
Check for suggested packages

#66 famuvie opened 8 years ago
0