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fanagislab / EndHiC

EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.
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question about simulated dataset #1

Open guanttttt opened 1 year ago

guanttttt commented 1 year ago

Hello! @fanagislab EndHic is a very good method. When I read the paper, I have a little doubt about the simulated contig data set. You described: "each chromosome of reference genome was randomly split into 1–6 contigs". What tools did you use to do this? Looking forward to your reply，thanks.

fanagislab commented 1 year ago

Hengchao, Could you please anwer this question ?

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From: guanttttt Date: 2022-12-19 13:16 To: fanagislab/EndHiC CC: fanwei; Mention Subject: [fanagislab/EndHiC] question about simulated dataset (Issue #1) Hello! @fanagislab EndHic is a very good method. When I read the paper, I have a little doubt about the simulated contig data set. You described: "each chromosome of reference genome was randomly split into 1–6 contigs". What tools did you use to do this? Looking forward to your reply，thanks. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>