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fanglab / nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
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R package does not have a namespace #43

Closed mei-du closed 2 years ago

mei-du commented 2 years ago

Hi,

First time Singularity (and Nanodisco) user and I'm getting this error when trying to run preprocess. Would it be something to do with my R or during installation, like during the below step in postInstall? A bit confused as parallel is a base package?

Thanks!

image

# Prepare for installing R packages
echo "options(repos ='https://cran.rstudio.com/', \
  unzip = 'internal', \
  download.file.method ='libcurl', \
  Ncpus = parallel::detectCores() )" >> /usr/local/lib/R/etc/Rprofile.site #  /etc/R/Rprofile.site
mei-du commented 2 years ago

Resolved after reverting to singularity v3.5.2